Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTCTGATACAAGCAGCGGTTTCACCTTCGTCTTCTTCTTCTTCTCCTACTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGgtcaattcagttcacaacctttacatgctttacttcttgattcgatgaactctgcagttaaaacataattctgaaagtgggatcatttgttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G21960.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125282927|gb|EL297012.1|EL297012
EST:     TTCTCTCGAATCCGCCATTAACAAG                         AAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGT
genomic: TTCTCTCGAATCCGCCATTAACAAGgtcaattcag ... gttgatgcagAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGT
EST: gi|124811162|gb|EH896028.1|EH896028
EST:     CTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAG                         AAAGATAGTAATGGTGTTAAGGA
genomic: CTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGgtcaattcag ... gttgatgcagAAAGATAGTAATGGTGTTAAGGA
EST: gi|86072272|gb|DR368029.1|DR368029
EST:     CTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAG                         AAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGT
genomic: CTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGgtcaattcag ... gttgatgcagAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGT