Sequence
atgc intronic sequence ATGC exonic sequenceTCTCCGTATCGCTGCTAGTCTCTTAGGAGCTTGCTTTCCTGGCTCTGCTGCTAGAATCATGGCTTTTATTGGTGGACCTTCCACTCAAGGCCCTGGAGCTgtaagtcttttctcttgttattcatatccgttactagaaactcagtgctactgcttgctgatgatctttcgttgcctttttctag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G21630.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 2
TCTCCGTATCGCTGCTAGTCTCTTAGGAGCTTGCTTTCCTGGCTCTGCTGCTAGAATCATGGCTTTTATTGGTGGACCTTCCACTCAAGGCCCTGGAGCTgtaagtcttttctcttgttattcatatccgttactagaaactcagt-----gctactgcttgctgatgatcttt-cgttgcctttttctag----------
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ACTGAGTATCGCGGCGGGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCGAGAATAATGGCATTTATTGGAGGACCGGCTACTGAAGGACCTGCTCCTgtaagagcta-ctcatgaaacctgtgtatttttgtgtaagcttagcaatgcgctatttaatgttgtagttatatatgtggcaatatatgagttctataatt
upper sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G09230.1 (Glycine max), 5'ss of exon 2
TCTCCGTATCGCTGCTAGTCTCTTAGGAGCTTGCTTTCCTGGCTCTGCTGCTAGAATCATGGCTTTTATTGGTGGACCTTCCACTCAAGGCCCTGGAGCTgtaagtcttttctcttgttattcatatccgttactagaaactcag-----tgctactgcttgctgatgatcttt-cgttgcctttttctag----------
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ACTGAGTATTGCGGCGAGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCAAGAATAATGGCATTTATTGGAGGACCAGCTACTGAAGGACCTGCTCCTgtaagagcta-ctcatgaagcttgtgtagttatgtataagcttggcaatgtgctatttaatgttgtagttatatatgtggcaatatatgagttctaaaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164209386|gb|EL977208.1|EL977208EST: TGGCTTTTATTGGTGGACCTTCCACTCAAGGCCCTGGAGCT ATTGTTCCTCGGGAGCTTTCGGATCCTATTC
genomic: TGGCTTTTATTGGTGGACCTTCCACTCAAGGCCCTGGAGCTgtaagtcttt ... ctttttctagATTGTTTCTCGGGAGCTTTCGGATCCTATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCCGTATCGCTGCTAGTCTCTTAGGAGCTTGCTTTCCTGGCTCTGCTGCTAGAATCATGGCTTTTATTGGTGGACCTTCCACTCAAGGCCCTGGAGCTgtaagtcttttctcttgttattcatatccgttactagaaactcagtgctactgcttgctgatgatctttcgttgcctttttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT