Sequence
atgc intronic sequence ATGC exonic sequenceTGTTTCTTCTTCGGTTGGTCCTGAGTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTGATGCATAACAAGgtattgagttttacaatgctcttccatggaaacgttgaaccaattcttctatgtgatattttttattatttttgtgatag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G20140.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G20140.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA03G32800.1 (Glycine max), 5'ss of exon 1
TGTTTCTTCTTCGGTTGGTCCTGAGTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTGATGCATAACAAGgtattgagttttacaatgctcttccatggaaacgttgaaccaattcttctatgtgatattttttattatttttgtgatag------------------------
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CGTTTCGTCCTCGGTGGGGCCCGAGTACTATGTTGGTATTTTGTCTTTCGTTGATAAGGATCAGCTCGAACCTGGATGCGCTATTTTGATGCATAACAAGgtaggg----ttagggttttgttttgctgattggttgaattgtttttgcgttttgattgaatgcactaagtttgtgatggattttgggttagggtttagtgatt
upper sequence: AT2G20140.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA19G35510.1 (Glycine max), 5'ss of exon 1
TGTTTCTTCTTCGGTTGGTCCTGAGTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTGATGCATAACAAGgta---ttgagttttacaatgctcttccatggaaacgttgaaccaattcttctatgtga------tatttt-ttattatttttgtgatag------------
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AGTTTCGTCCTCGGTGGGGCCCGAGTACTATGTTGGTATCTTGTCTTTCGTCGATAAGGATCAGCTCGAGCCTGGATGCGCTATTTTGATGCATAACAAGgtagggttagggtatgc--tgctgatttgttgaattgttttagcgttttgattgattgactgccctattttgtgatggattttggggggggggggggggggg
upper sequence: AT2G20140.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 1
TGTTTCTTCTTCGGTTGGTCCTGAGTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTGATGCATAACAAGgtattgagt-tttacaatgctcttccatgga-----aacgttgaaccaa------ttcttctatgtgatattttttattatttttgtgatag--------
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TGTCTCCTCCTCCGTTGGGCCTGAGTACTATGTCGGAATCCTGTCTTTCGTTGATAAGGATCAGTTGGAGCCTGGTTGTGCTATTTTGATGCATAATAAGgttttacttactcgctttactcttttattggtggtgattattgaaatgaaaagtatccagttattagaaatacctaattgcctagggtttgactttgagg
upper sequence: AT2G20140.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 1
TGTTTCTTCTTCGGTTGGTCCTGAGTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTGATGCATAACAAGgtattgagt-tttacaatgctcttccat-ggaaacgttgaaccaattcttctatgtgatattttttattatttttgtgatag-------------------
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TGTTTCCTCCTCCGTCGGGCCTGAGTATTACGTCGGAATCTTGTCTTTCGTCGATAAGGATCAGTTGGAGCCTGGTTGTGCTATTTTGATGCATAATAAGgttttgctcactcgctttacgcttttattggtggtggttattgaaatgaaatacgtcaaattatgaaat-tattggaaatacctcattgcctagggtttgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86040345|gb|DR336100.1|DR336100EST: GATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTTGATGCATAAACAAG GTACTCTCTGTTGT
genomic: GATAAGGATCAGCTTGAACCTGGCTGCTCTATTTT-GATGCATAA-CAAGgtattgagtt ... tttgtgatagGTACTCTCTGTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTTCTTCTTCGGTTGGTCCTGAGTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTGATGCATAACAAGgtattgagttttacaatgctcttccatggaaacgttgaaccaattcttctatgtgatattttttattatttttgtgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT