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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTCTCGGATCCGGTGAAGAAGCTGCCGCCGATCACATCTTCCAGTTTCCAGAGATTCTAAAGCTTTTGTCTTTTGATCCTTCATCGAATTCATTGAGgttggttttcaattttctttcacatttccagaagaaagattcttctttcttctccctctgtttttggatctgttgagttttcttgtcggatttaaagatt...

Basic information

species Arabidopsis thaliana
transcript AT2G18280.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124911476|gb|EH985556.1|EH985556
EST:     TCGAATTCATTGAG                         CTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
genomic: TCGAATTCATTGAGgttggttttc ... gtgattgcagCTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
EST: gi|116376565|gb|EG419157.1|EG419157
EST:     CCAGAGATTCTAAAGCTTTTGTCTTTTGATCCTTCATCGAATTCATTGAG                         CTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
genomic: CCAGAGATTCTAAAGCTTTTGTCTTTTGATCCTTCATCGAATTCATTGAGgttggttttc ... gtgattgcagCTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
EST: gi|125262788|gb|EL276873.1|EL276873
EST:     CTAAAGCTTTTGTCTTTTGATCCTTCATCGAATTCATTGAG                         CTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
genomic: CTAAAGCTTTTGTCTTTTGATCCTTCATCGAATTCATTGAGgttggttttc ... gtgattgcagCTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
EST: gi|124842626|gb|EH927063.1|EH927063
EST:     TCGAATTCATTGAG                         CTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
genomic: TCGAATTCATTGAGgttggttttc ... gtgattgcagCTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
EST: gi|125231746|gb|EL245831.1|EL245831
EST:     TCATCGAATTCATTGAG                         CTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC
genomic: TCATCGAATTCATTGAGgttggttttc ... gtgattgcagCTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATC