1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGATAGGCTTATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTCAAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGAATCAGAAGgtatgaatgaatttgattttgattttgatttagaggtttgtgatgtttctcgaaaggtgaaatctttgtgtttgttatagctgtgtcatggaatgtttgc...
species | Arabidopsis thaliana |
transcript | AT2G17840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACACCTTGAAAAGAATCAGAAG AGTGAAGAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCEST: gi|124956612|gb|EL031518.1|EL031518
genomic: GACACCTTGAAAAGAATCAGAAGgtatgaatga ... gcctatgcagAGTGAAGAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTC
EST: ACCCTGACACCTTGAAAAGAATCAGAAG AGTGAAGAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTC
genomic: ACCCTGACACCTTGAAAAGAATCAGAAGgtatgaatga ... gcctatgcagAGTGAAGAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATAGGCTTATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTCAAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGAATCAGAAGgtatgaatgaatttgattttgattttgatttagaggtttgtgatgtttctcgaaaggtgaaatctttgtgtttgttatagctgtgtcatggaatgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA