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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATTTCGTCGAACGCATTAAAGACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttcgtttcttgtaactcttcttgagattgtctgtagttctaaaactcgattttggatctaattgttgctcatcttcgattggattgagttggatcattgaattgatttgattattagaaagtttgtaacttggagctaagaaagctgattcctttttcatgttcag

Basic information

species Arabidopsis thaliana
transcript AT2G17730.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17730.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G08540.1 (Glycine max), 5'ss of exon 1
GGGAATTTCGTCGAACGCATTAAAGACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttcgtttcttgtaactcttcttgagattgtctgtagttctaaaactcgattttggatctaattgttgctcatcttcgattggattgagttggatcattgaattgatttgattattagaaagtttgtaacttggagctaagaaagctgattcctttttcatgttcag
| ||||||||||||  |  ||||| |   | ||    ||    | ||||| ||  | || | |||  ||||||||||||||||||||| ||||||| |||||||| || ||| | ||    || || || |  ||   | |  |||       |  || | | || ||   ||| ||  ||||  ||    |   | | ||||| |  |||                                                              
GTGAATTTCGTCGAGAGGGTTAAACAGCTTGGTACCCTCGCCTTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgatt-cgtcttttc---cttttattcattttcattttcattc---gttgcatttctcgctcaaacgcttgatctgcttctgtt----tacctcgtatcatgggtttg--------------------------------------------------------------

upper sequence: AT2G17730.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA01G36760.1 (Glycine max), 5'ss of exon 2
GGGAATTTCGTCGAACGCATTAAAGACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttcgtttcttgtaactcttcttgagattgtctgtagttctaaaactcgattttggatctaattgttgctcatcttcgattggattgagttggatcattgaattgatttgattattagaaagtttgtaacttggagctaagaaagctgattcctttttcatgttcag
| |||| |||| ||  | |||||| |   | ||    ||   || ||||| ||  | || | |||  ||||||||||||||||||||| ||||||| |||||||  || | | | |     | ||| |    ||| |   |  |||      |  ||||| | || ||   ||| ||  ||||  ||    |   | | ||||| |  |||                                                              
GTGAATCTCGTTGAGAGGATTAAACAGCTTGGTACCCTCGCCGTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttaatt-catcttt-----cccttttattaatttttcatt-ttcattcgttgcattttcgctccaacgcttgatctgcttctgtt----tacctcgtatcatgggtttg--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86056628|gb|DR352385.1|DR352385
EST:     TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056626|gb|DR352383.1|DR352383
EST:     TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056631|gb|DR352388.1|DR352388
EST:     TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056625|gb|DR352382.1|DR352382
EST:     TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056624|gb|DR352381.1|DR352381
EST:     TGTTTTGGGTA-CATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056632|gb|DR352389.1|DR352389
EST:     TGTTTTGGGTA-CATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056623|gb|DR352380.1|DR352380
EST:     TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056633|gb|DR352390.1|DR352390
EST:     TGTTTTGGGTAC-ATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGCGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACT
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTG-GGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACT
EST: gi|86056627|gb|DR352384.1|DR352384
EST:     TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056622|gb|DR352379.1|DR352379
EST:     TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: gi|86056630|gb|DR352387.1|DR352387
EST:     TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG                         TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG