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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCGGAGACCAGTTTGCCGGTGGCCGTTACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATACTCGCACTTCTgtacgcatctctctccttatatcttgctttactatgccaacaagatcttaaatgcagaatttgatttcgtaaatttgttttaagcatgttcccgttagtc...

Basic information

species Arabidopsis thaliana
transcript AT2G17530.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17530.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G33020.1 (Glycine max), 5'ss of exon 1
AATCGGAGACCAGTTTGCCGGTGGCCGTTACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATACTCGCACTTCTgtacgcatctctctccttatatcttgctttactatgccaacaagatcttaaatgcagaatttgatttcgtaaatttgttttaagcat---gttcccgttagtc-
| |||  |||||||| ||||| ||| | ||||| || ||||| ||||| ||||||||||| || || || |||||||||||||||||||||   || |||||| |  |    |||  | |    |  || | | |   ||       ||   ||   | ||   |         ||||||| |   |    || ||  ||| | 
AGTCGCCGACCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTCGGTTGGGGCCAGTTTTCAACAGTTTGGCTTGCCTATGATACTACTACATCTgtatgtttgatcctcactcttctctttttcattcttttaat----ctttctttgtttatttccttccaaaggggttgttttgaaatttgaattgcccctagcct

upper sequence: AT2G17530.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G21430.1 (Glycine max), 5'ss of exon 1
AATCGGAGACCAGTTTGCCGGTGGCCGTTACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATACTCGCACTTCTgtacgcatctctctccttatatcttgctttactatgccaacaagatcttaaatgcagaatttgatttcgtaaatttgttttaagcatgttcccgttagtc--
| |||  || ||||| ||||| ||| | ||||| || ||||| ||||| |||||||| || || || || |||||||||||||||||||||   || |||||| |  |    ||   | | ||| | |||  | |  |       || |   |  |   |||  ||| || | ||  ||  ||    |||    | | |   
AGTCGCCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTCGGTTGGGGTCAGTTTTCAACAGTTTGGCTTGCCTATGATACTACTACATCTgtatgtttgatccttactct-tctcgttttcatttttctcttttttcattcttttaatctttc-tttggttatttccttccaaaggggttgttttgaattgg

upper sequence: AT2G17530.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv07s0031g02130.t01 (Vitis vinifera), 5'ss of exon 1
AATCGGAGACCAGTTTGCCGGTGGCCGTTACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATACTCGCACTTCTgtacgcatctctctccttatatcttgctttactatgccaacaagatcttaaatgcagaatttgatttcgtaaatttgttttaagcat-gttcccgttagtc-
| |||| || | |||  |||| || || ||||| || ||||| ||||| ||||||||| | ||||||||||| |||||||| || || || ||  | ||||||||  |||   ||  | | || | ||    ||| | | |    ||||   |       | ||   ||    |   ||||   | | |||| ||||  |  
AGTCGGCGATCCGTTCTCCGGAGGTCGGTACATCGCGCAGAGGAAGCTCGGTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgt-tcttcttctctctttcattctgatttat-ctatcttcttcttttttttttccctcgaaagcggcgttgctttttggtcttcgttcacgttttttg