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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGTCGTTGACAAGTCTCAGATTTGGAAGCAGCTTCAACACTTCTCTCAGTTTCCTGATTTCAACAACTATCTCGTCTTCATCCTCGTTCGCGCTGAGgttttggaacttttctctactctctcttcgcttcctgagattttttttcttctccgtattgactcaatctatttgtcgaatgagttcggatcgttgaatt...

Basic information

species Arabidopsis thaliana
transcript AT2G16950.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16950.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 1
CTCCGTCGTTGACAAGTCTCAGATTTGGAAGCAGCTTCAACACTTCTCTCAGTTTCCTGATTTCAACAACTATCTCGTCTTCATCCTCGTTCGCGCTGAGgttttggaacttttctctactctctcttcgcttcctgagattttttttcttctccgtatt---gactcaatctatttgtcgaatgagttcggatcgttgaatt---
  |   |   || ||||||||||||||| ||||||| || ||||||||||| || || |||||||||||||| ||||||||||| ||||  ||||||||||| |        |  |||  | |||      ||   | | |||  ||  ||    |  ||   |  ||      |  || |  |    | |||  | ||       
TCCTTCCTCCGATAAGTCTCAGATTTGGCAGCAGCTCCAGCACTTCTCTCACTTCCCCGATTTCAACAACTACCTCGTCTTCATTCTCGCCCGCGCTGAGgtgtg------ctcttctgatatctgaagttttgaaggggtttcgttgatttgggggttttggggatcgtgggttgggtagggttttgttggaatggtgggccggg

upper sequence: AT2G16950.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ11805 (Selaginella moellendorffii), 5'ss of exon 1
CTCCGTCGTTGACAAGTCTCAGATTTGGAAGCAGCTTCAACACTTCTCTCAGTTTCCTGATTTCAACAACTATCTCGTCTTCATCCTCGTTCGCGCTGAGgttttggaacttttctctactctctcttcgcttcctgagattttttttc--ttctccgtattg--actcaatctatttgtcgaatgagttcgg--atcgttgaatt
  ||  ||  ||| || | | |||||   ||||||| || | || |   ||| | || ||||||||||| ||||||||||||||||||   |||   |||||     ||     ||| | || |||||   | | |||   |||  |||  |||| || ||||  |  ||||   || ||        |   |  |||  |  |  
GCCCAACGCCGACCAGGCGCGGATTTTCGAGCAGCTCCAGCGCTGCAGCCAGGTCCCGGATTTCAACAATTATCTCGTCTTCATCCTCTGCCGCAGCGAGgt-----aagcgcgctccaatc-ctcttttttgcatgactctttgcttcgattctgcgcattgctaggcaatggcttggttttgctcttctagcgatctctatagc