1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATCACCAGTAGATATGTCAGAAAATTAGAAGCAACCGTTGATATGCCTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAGgtacacaaatcttttcttttatgagttttttgtggtgggttctgtttttaattatgagttctttggtgggttacctccaagtgttaggttaggttggtgt...
species | Arabidopsis thaliana |
transcript | AT2G16430.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAG GTGCATATAACACAAGGAGATGTAGAAAGGAAAGGCAGTGATAGTATCATGEST: gi|124778458|gb|EH868401.1|EH868401
genomic: CGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAGgtacacaaat ... gggcaaaaagGTGCATATAACACAAGGAGATGTAGAA-GGAAAGGCAGTGATAGTATCATG
EST: TTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAG GTGCATATAACACAAGGAGATGTAGAAGGEST: gi|125026080|gb|EL098349.1|EL098349
genomic: TTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAGgtacacaaat ... gggcaaaaagGTGCATATAACACAAGGAGATGTAGAAGG
EST: CGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAG GTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGGEST: gi|124725235|gb|EH816637.1|EH816637
genomic: CGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAGgtacacaaat ... gggcaaaaagGTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGG
EST: TTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAG GTGCATATAACAC
genomic: TTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAGgtacacaaat ... gggcaaaaagGTGCATATAACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCACCAGTAGATATGTCAGAAAATTAGAAGCAACCGTTGATATGCCTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAGgtacacaaatcttttcttttatgagttttttgtggtgggttctgtttttaattatgagttctttggtgggttacctccaagtgttaggttaggttggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC