Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGTGGCGGCTGCGGCGGGACACGTCTGGACACGGCGACCATCGTTCTCTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCGgtaatgaaatgaataaattattatacagaaaagagaacaaaattaatatatagttgtgttttatgttttatgaagttttttttcttaaaataatatttcgtaaaagtatttcggtttgagagtttggaatcttataattttgtaaaattatag

Basic information

species Arabidopsis thaliana
transcript AT2G15580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075412|gb|DR371169.1|DR371169
EST:     CTCTTTACACTACCAATCATGAGAGCCWCCAGGCCCATGTCTCCTTCTCG                         GAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
genomic: CTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCGgtaatgaaat ... aaaattatagGAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
EST: gi|86081647|gb|DR377404.1|DR377404
EST:     CTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCG                         GAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
genomic: CTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCGgtaatgaaat ... aaaattatagGAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
EST: gi|86080999|gb|DR376756.1|DR376756
EST:     CTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCG                         GAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
genomic: CTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCGgtaatgaaat ... aaaattatagGAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
EST: gi|86075508|gb|DR371265.1|DR371265
EST:     CTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCG                         GAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
genomic: CTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCGgtaatgaaat ... aaaattatagGAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
EST: gi|86081978|gb|DR377737.1|DR377737
EST:     CTCTTTACACTACCAATCATGAGAGCCACCAGGCCC--GTCTCCTTCTCG                         GAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT
genomic: CTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCGgtaatgaaat ... aaaattatagGAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTT