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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTACATACGAAGATCTCCAGCCAGAGATTCAACGCATTGCTGATGGAGACCGCTCTCCCATCTTATCTGCCCATCCCATCTCTGAGTTCCTCACTAGgtttgttcaccatactttgttctctatctttactttaccgattactaaatcaatcaaaatccataaaccaataactcctaaaaacatttttccag

Basic information

species Arabidopsis thaliana
transcript AT2G14960.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14960.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ23432 (Selaginella moellendorffii), 5'ss of exon 1
TCATTACATACGAAGATCTCCAGCCAGAGATTCAACGCATTGCTGATGGAGACCGCTCTCCCATCTTATCTGCCCATCCCATCTCTGAGTTCCTCACTAGgtttgttcaccatactttgttctctatctttactttaccgattactaaatcaatcaaaatccataaaccaataactcctaaaaacatttttccag-
|||| || ||||| || ||| |||| ||||| |||||||||||  |||| |||  ||| |||||| | || |||||||||||||| ||||||||||| ||||  |      || ||   | ||   ||||| | ||  ||||   |    | ||    |||   |      || |||  ||      |  |||   
TCATCACCTACGAGGACCTCGAGCCCGAGATCCAACGCATTGCCAATGGCGACACCTCGCCCATCCTCTCCGCCCATCCCATCTCCGAGTTCCTCACCAGgtaagaaagaaattctcgatcct---tctttccatttgcgat--gttgggcgatggcgatctcgatgttggta-ctcacaattttgctcctcccag

upper sequence: AT2G14960.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ25415 (Selaginella moellendorffii), 5'ss of exon 1
TCATTACATACGAAGATCTCCAGCCAGAGATTCAACGCATTGCTGATGGAGACCGCTCTCCCATCTTATCTGCCCATCCCATCTCTGAGTTCCTCACTAGgtttgttcaccatactttgttctctatctttactttaccgattactaaatcaatcaaaatccataaaccaataactcctaaaaacatttttc-cag
|||| || ||||| || ||| |||| ||||| |||||||||||  |||| |||  ||| |||||| | || |||||||||||||| ||||||||||| ||||  |      || ||   | ||   ||||| | ||  ||||   |    | ||    |||   |      || |||  ||      |  || |||
TCATCACCTACGAGGACCTCGAGCCCGAGATCCAACGCATTGCCAATGGCGACACCTCGCCCATCCTCTCCGCCCATCCCATCTCCGAGTTCCTCACCAGgtaagaaagaaattctcgatcct---tctttccatttgcgat--gttgggcgatggcgatctcgatgttggta-ctcacaattttgctcctctcag