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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCGTCATCTAGCCCACCTCTTCCATCAAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAGgttagtaaccttttcttctagatcttgtacaatgtgtttcagatctgagatgttttgtctgaacttgaatagatctaaaacggtatgatttagaaaaaag...

Basic information

species Arabidopsis thaliana
transcript AT2G14890.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125226804|gb|EL240889.1|EL240889
EST:     CACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAG                         AATGGAGCTAGCAAGATGGTTTCGAGCTTAGTTATTTGGATCTGTTCTC
genomic: CACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAGgttagtaacc ... tgttttgcagAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT-ATTTGGATCTGTTCTC
EST: gi|124730043|gb|EH821445.1|EH821445
EST:     CTGATGTGAACGACCAG                         AATGGAGCTAGCAAGATGGTTTCGAGCTTAGTATTTGGATCTGTTCTCGTC
genomic: CTGATGTGAACGACCAGgttagtaacc ... tgttttgcagAATGGAGCTAGCAAGATGGTTTCGAGCTTAGTATTTGGATCTGTTCTCGTC
EST: gi|163971999|gb|ES156350.1|ES156350
EST:     GCACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAG                         AATGGAGCTAGCAAGATGGTTTCGAGCTTAG
genomic: GCACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAGgttagtaacc ... tgttttgcagAATGGAGCTAGCAAGATGGTTTCGAGCTTAG
EST: gi|116481586|gb|EG524178.1|EG524178
EST:     GCACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAG                         AATGGAGCTAGCAAGATGGTTTCGAGCTTAGTATTTGGATCTGTTCTCGTC
genomic: GCACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAGgttagtaacc ... tgttttgcagAATGGAGCTAGCAAGATGGTTTCGAGCTTAGTATTTGGATCTGTTCTCGTC
EST: gi|116449861|gb|EG492453.1|EG492453
EST:     GCACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAG                         AATGGAGCTAGCAAGATGGTTTCGAGCTTAGTATTTGGATCTGTTCTCGTC
genomic: GCACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAGgttagtaacc ... tgttttgcagAATGGAGCTAGCAAGATGGTTTCGAGCTTAGTATTTGGATCTGTTCTCGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTCCGTCATCTAGCCCACCTCTTCCATCAAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGCTCCTAGCCCCACTGATGTGAACGACCAGgttagtaaccttttcttctagatcttgtacaatgtgtttcagatctgagatgttttgtctgaacttgaatagatctaaaacggtatgatttagaaaaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa