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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATAAAATAAAAAAAAGAAAAAGAAGAAGATATATTAAAGAGGTTTGTGAAGACGAAGGAGTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttctctcttccttgcaaatttacttcttcgttttctccgcttgtttgtgtctatgatcttgcctatgaaacatctttttatagtacacatata...

Basic information

species Arabidopsis thaliana
transcript AT2G13360.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054073|gb|DR349830.1|DR349830
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054085|gb|DR349842.1|DR349842
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054063|gb|DR349820.1|DR349820
EST:     AGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054092|gb|DR349849.1|DR349849
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054099|gb|DR349856.1|DR349856
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054116|gb|DR349873.1|DR349873
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054133|gb|DR349890.1|DR349890
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054094|gb|DR349851.1|DR349851
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054061|gb|DR349818.1|DR349818
EST:     CCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCAAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054072|gb|DR349829.1|DR349829
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054148|gb|DR349905.1|DR349905
EST:     CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054117|gb|DR349874.1|DR349874
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054127|gb|DR349884.1|DR349884
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054060|gb|DR349817.1|DR349817
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054138|gb|DR349895.1|DR349895
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054089|gb|DR349846.1|DR349846
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCATAGTTTAG                         AGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAG
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--AG---AGgttaaacttc ... gacagtgtagAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAG
EST: gi|86054114|gb|DR349871.1|DR349871
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054058|gb|DR349815.1|DR349815
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054135|gb|DR349892.1|DR349892
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054115|gb|DR349872.1|DR349872
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054112|gb|DR349869.1|DR349869
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054145|gb|DR349902.1|DR349902
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054098|gb|DR349855.1|DR349855
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054076|gb|DR349833.1|DR349833
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054093|gb|DR349850.1|DR349850
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054126|gb|DR349883.1|DR349883
EST:     AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054064|gb|DR349821.1|DR349821
EST:     CTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054142|gb|DR349899.1|DR349899
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054097|gb|DR349854.1|DR349854
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054084|gb|DR349841.1|DR349841
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054137|gb|DR349894.1|DR349894
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054129|gb|DR349886.1|DR349886
EST:     CTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054070|gb|DR349827.1|DR349827
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054119|gb|DR349876.1|DR349876
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054059|gb|DR349816.1|DR349816
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054066|gb|DR349823.1|DR349823
EST:     CTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054106|gb|DR349863.1|DR349863
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054149|gb|DR349906.1|DR349906
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054083|gb|DR349840.1|DR349840
EST:     CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054081|gb|DR349838.1|DR349838
EST:     AGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054065|gb|DR349822.1|DR349822
EST:     AGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054068|gb|DR349825.1|DR349825
EST:     TCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: TCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054144|gb|DR349901.1|DR349901
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054080|gb|DR349837.1|DR349837
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054090|gb|DR349847.1|DR349847
EST:     AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054074|gb|DR349831.1|DR349831
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054151|gb|DR349908.1|DR349908
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054121|gb|DR349878.1|DR349878
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054141|gb|DR349898.1|DR349898
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054108|gb|DR349865.1|DR349865
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054146|gb|DR349903.1|DR349903
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054139|gb|DR349896.1|DR349896
EST:     AAAACCTCGCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTC-CCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054100|gb|DR349857.1|DR349857
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054154|gb|DR349911.1|DR349911
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054062|gb|DR349819.1|DR349819
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054071|gb|DR349828.1|DR349828
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054134|gb|DR349891.1|DR349891
EST:     GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054082|gb|DR349839.1|DR349839
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054079|gb|DR349836.1|DR349836
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054104|gb|DR349861.1|DR349861
EST:     AAAACCCCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054086|gb|DR349843.1|DR349843
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054153|gb|DR349910.1|DR349910
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|124758806|gb|EH848936.1|EH848936
EST:     CTTCCGCCTTATTCAGAG                         AGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGG
genomic: CTTCCGCCTTATTCAGAGgttaaacttc ... gacagtgtagAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGG
EST: gi|86054091|gb|DR349848.1|DR349848
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054107|gb|DR349864.1|DR349864
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054088|gb|DR349845.1|DR349845
EST:     AACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: gi|86054130|gb|DR349887.1|DR349887
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG                     
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATAAAATAAAAAAAAGAAAAAGAAGAAGATATATTAAAGAGGTTTGTGAAGACGAAGGAGTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttctctcttccttgcaaatttacttcttcgttttctccgcttgtttgtgtctatgatcttgcctatgaaacatctttttatagtacacatata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT