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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAACTTTTTGACCCTAAAACGAAAGACCCTTCTCTAGCACGTCGGGGTTCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacctctctctctcttaaatcagctcaattttctagtggaatattcttctttccccagtaagatgttgcagaaaatggaattgtaatgtgtatagttacaacag

Basic information

species Arabidopsis thaliana
transcript AT2G07340.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036312|gb|DR332065.1|DR332065
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86079502|gb|DR375259.1|DR375259
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|163992040|gb|ES000987.1|ES000987
EST:     CAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: CAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036311|gb|DR332064.1|DR332064
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036314|gb|DR332067.1|DR332067
EST:     AAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: AAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036302|gb|DR332055.1|DR332055
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036303|gb|DR332056.1|DR332056
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036310|gb|DR332063.1|DR332063
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036301|gb|DR332054.1|DR332054
EST:     CAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: CAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036305|gb|DR332058.1|DR332058
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036306|gb|DR332059.1|DR332059
EST:     CAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: CAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036307|gb|DR332060.1|DR332060
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036309|gb|DR332062.1|DR332062
EST:     CAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: CAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|124843567|gb|EH928004.1|EH928004
EST:     CGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: CGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036308|gb|DR332061.1|DR332061
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
EST: gi|86036313|gb|DR332066.1|DR332066
EST:     TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCT                         GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA
genomic: TCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacct ... gttacaacagGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTAACTTTTTGACCCTAAAACGAAAGACCCTTCTCTAGCACGTCGGGGTTCGTTCAAAGATCAAGATCTGCAGACATGGCGGACGAAGCAACCAGAGCTgtgagtacctctctctctcttaaatcagctcaattttctagtggaatattcttctttccccagtaagatgttgcagaaaatggaattgtaatgtgtatagttacaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT