1 5' 3' | 2 5' 3' | 3 5' 3' |
GTACCATTTGGTCGTAACTACGTCCCAACTTGGGCTTTTGACCACCAGAAACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattactattaccaaatctctgcctaatgatcacaatgcaagttttgatattcccattttttatttggtatataggctaaagcttaatttttaaag...
species | Arabidopsis thaliana |
transcript | AT2G06850.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125239980|gb|EL254065.1|EL254065
genomic: CGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTEST: gi|124907802|gb|EH981882.1|EH981882
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGT
EST: TCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|124936353|gb|EL013264.1|EL013264
genomic: TCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAEST: gi|301502134|gb|HO207674.1|HO207674
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCA
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125254153|gb|EL268238.1|EL268238
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: CCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTAATGEST: gi|124828639|gb|EH913475.1|EH913475
genomic: CCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTA-TG
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTTATGEST: gi|125236652|gb|EL250737.1|EL250737
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGT-ATG
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTAEST: gi|125196942|gb|EL211896.1|EL211896
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTA
EST: TTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|124980274|gb|EL053238.1|EL053238
genomic: TTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: GGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125006617|gb|EL078886.1|EL078886
genomic: GGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAAT-CACTG GCACAGGATTTEST: gi|124927957|gb|EL005644.1|EL005644
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTT
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTAEST: gi|125277807|gb|EL291892.1|EL291892
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTA
EST: TCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|124919794|gb|EH993532.1|EH993532
genomic: TCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGAEST: gi|124921703|gb|EL000064.1|EL000064
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGA
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCEST: gi|124888090|gb|EH966992.1|EH966992
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|124873107|gb|EH954752.1|EH954752
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGEST: gi|124938720|gb|EL015324.1|EL015324
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAG
EST: CTCGACAAATACACTG GCACAGGATTTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGEST: gi|124939633|gb|EL016158.1|EL016158
genomic: CTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGA-TTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATG
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAEST: gi|125292259|gb|EL306344.1|EL306344
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTA
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGTATTTCAEST: gi|125008050|gb|EL080319.1|EL080319
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGG-ATTTCA
EST: ATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125031881|gb|EL104150.1|EL104150
genomic: ATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: CAAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATEST: gi|124816577|gb|EH901443.1|EH901443
genomic: C-AGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATAT
EST: TTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125262020|gb|EL276105.1|EL276105
genomic: TTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAAEST: gi|124835389|gb|EH919828.1|EH919828
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAA
EST: CTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|152035275|gb|BP849379.2|BP849379
genomic: CTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGT-CCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGAAATTTTAGTATGCEST: gi|125197627|gb|EL212581.1|EL212581
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: CAGTTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGEST: gi|125217652|gb|EL231735.1|EL231735
genomic: CAG-TTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTG
EST: CGAACTTCAGCTTATCCTCGACAAATACACAG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|124943215|gb|EL019413.1|EL019413
genomic: CGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGEST: gi|125288780|gb|EL302865.1|EL302865
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTG
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGEST: gi|125237573|gb|EL251658.1|EL251658
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAG
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATAEST: gi|124739058|gb|EH830220.1|EH830220
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATA
EST: CAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125219546|gb|EL233631.1|EL233631
genomic: CAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCAEST: gi|124800609|gb|EH890274.1|EH890274
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCA
EST: CCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125188202|gb|EL203156.1|EL203156
genomic: CCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: CGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125148279|gb|EL182030.1|EL182030
genomic: CGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: CAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125238692|gb|EL252777.1|EL252777
genomic: CAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACGAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTT-AGTATGCEST: gi|125203172|gb|EL218126.1|EL218126
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATEST: gi|125324203|gb|EL338283.1|EL338283
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAAT
EST: CTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|124926304|gb|EL004167.1|EL004167
genomic: CTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: TTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125203538|gb|EL218492.1|EL218492
genomic: TTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: TGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125274321|gb|EL288406.1|EL288406
genomic: TGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTTGTTTGGACATTTTAGEST: gi|124744871|gb|EH836033.1|EH836033
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTT-GTTTGGACATTTTAG
EST: TCCGAAACTTCAGCTTATCCTCGACAAATACTACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGEST: gi|124919787|gb|EH993525.1|EH993525
genomic: TCCG-AACTTCAGCTTATCCTCGACAAATAC-ACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATG
EST: TTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCEST: gi|125037060|gb|EL109329.1|EL109329
genomic: TTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGC
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTEST: gi|124777205|gb|EH867148.1|EH867148
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTT
EST: CAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAAATACACTG GCACAGGATTTCAATCAAAGGGGEST: gi|125312143|gb|EL326228.1|EL326228
genomic: CAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAA-TACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGG
EST: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTG GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTA
genomic: ACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattac ... ataaaaacagGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCATTTGGTCGTAACTACGTCCCAACTTGGGCTTTTGACCACCAGAAACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGgtacaattactattaccaaatctctgcctaatgatcacaatgcaagttttgatattcccattttttatttggtatataggctaaagcttaatttttaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctgcc