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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGATGAAGGAAGAGACTGGTCTAGCTCAATTTTGCTTTTTGCGCTTTGGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACACCCgtacgcaatcttcaaatacttcataaagttacgattttgcaatcataatataatcttaggtttttgtattgcag

Basic information

species Arabidopsis thaliana
transcript AT2G04360.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125251414|gb|EL265499.1|EL265499
EST:     TTGCTTCAATCTCGCTCCTGATCAAACACCC                         ACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGAT
genomic: TTGCTTCAATCTCGCTCCTGATCAAACACCCgtacgcaatc ... tgtattgcagACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGAT
EST: gi|116416787|gb|EG459379.1|EG459379
EST:     GGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACACCC                         ACACAAGACTCGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGAT
genomic: GGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACACCCgtacgcaatc ... tgtattgcagACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGAT
EST: gi|86069678|gb|DR365435.1|DR365435
EST:     GGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACACCC                         ACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGAT
genomic: GGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACACCCgtacgcaatc ... tgtattgcagACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGAT
EST: gi|19876655|gb|AU237486.1|AU237486
EST:     GGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACACCC                         ACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGAT
genomic: GGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACACCCgtacgcaatc ... tgtattgcagACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGAT