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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGACTAAGTTTTTTTTCTTCTGTATCTGTTGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAGgtaatctctttcaagaaacctagtcaatagggaaatttaatggaatataaggtttgagttttatagagatcttcttgtatcagcatgtgtcttgtgttaatgttctaaagaacctttcttaagacaactagcttcatttttatcacgagagatcaatgatatgataacagaagaatctcacttctttactttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G03600.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437776|gb|EG480368.1|EG480368
EST:     AAAGTCAAAGTTAAGACAAAAGCTTTAATAAG                         TGGGATTTGGCGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
genomic: AAAGTCAAAGTTAAGACAAAAGCTTTAATAAGgtaatctctt ... tttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
EST: gi|116437778|gb|EG480370.1|EG480370
EST:     AAGCTTTAATAAG                         TGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
genomic: AAGCTTTAATAAGgtaatctctt ... tttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
EST: gi|116437754|gb|EG480346.1|EG480346
EST:     TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAG                         TGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGTAAAGGAGGAAC
genomic: TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAGgtaatctctt ... tttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
EST: gi|116437773|gb|EG480365.1|EG480365
EST:     TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAG                         TGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAGC
genomic: TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAGgtaatctctt ... tttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
EST: gi|116437711|gb|EG480303.1|EG480303
EST:     AAAGTCAAAGTTAAGACAAAAGCTTTAATAAG                         TGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
genomic: AAAGTCAAAGTTAAGACAAAAGCTTTAATAAGgtaatctctt ... tttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC