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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCTCTATATACACATTCATCTGAGTAATAGAGTAAAAACGAAACACAAGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctctctttcactcttacaattgttacaattcgtctcgtgaatttcaattttcgatcgatttttacgatcatgtgattgtttcgcgttatgggtt...

Basic information

species Arabidopsis thaliana
transcript AT2G03120.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442939|gb|EG485531.1|EG485531
EST:     TGTGAGAGATTTGCTAATCTCGCTCTCGCAG                         GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
genomic: TGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: gi|86050554|gb|DR346309.1|DR346309
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG                         GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: gi|86050548|gb|DR346303.1|DR346303
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG                         GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCNRGTTTGAATGTTA
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: gi|86050557|gb|DR346312.1|DR346312
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG                         GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: gi|86050552|gb|DR346307.1|DR346307
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTTCTAATCTCGCTCTCGSAG                         GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTTAATGTTA
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: gi|86050546|gb|DR346301.1|DR346301
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG                         GTTTGACATTGGCACCACT
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACT
EST: gi|125327433|gb|EL341513.1|EL341513
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG                         GTTTGACATTGG
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGG
EST: gi|86050551|gb|DR346306.1|DR346306
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTVATCTCGCTCTCGCAG                         GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: gi|86050547|gb|DR346302.1|DR346302
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG                         GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: gi|86050549|gb|DR346304.1|DR346304
EST:     AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG                         GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTCTCTATATACACATTCATCTGAGTAATAGAGTAAAAACGAAACACAAGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctctctttcactcttacaattgttacaattcgtctcgtgaatttcaattttcgatcgatttttacgatcatgtgattgtttcgcgttatgggtt

- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctttc