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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCTATTTCTCAAACACACTCTCTCGTCTTCTCCAATAACTAACTTCTCCAAATCAAAGCCTTCTTCGAGATTTTGCGCATTCCTCGTTTTCTAATTCgtaagtttctcttttgtgtgtgtttctaatcgaaacttttgtgtcaatttcaaatcggaaacctaattaatttgttcaattcgctgtgatgttaaaaacccctaattacgttaaatttggaattag

Basic information

species Arabidopsis thaliana
transcript AT2G03070.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828569|gb|CK118253.1|CK118253
EST:     CCAAATCAAAGCCTTCTTCGAGATTTTGCGCATTCCTCGTTTTCTAATTC                         GGTTTGTGTATTAGCTCTGTGTTATCAATGGAGACACAGCCGCAGCAACCA
genomic: CCAAATCAAAGCCTTCTTCGAGATTTTGCGCATTCCTCGTTTTCTAATTCgtaagtttct ... ttggaattagGGTTTGTGTATTAGCTCTGTGTTATCAATGGAGACACAGCCGCAGCAACCA
EST: gi|19877005|gb|AU237836.1|AU237836
EST:     CCAAATCAAAGCCTTCTTCGAGATTTTGCGCATTCCTCGTTTTCTAATTC                         GGTTTGTGTATTAGCTCTGTGTTATCAATGGAGACACAGCCGCAGCAACCA
genomic: CCAAATCAAAGCCTTCTTCGAGATTTTGCGCATTCCTCGTTTTCTAATTCgtaagtttct ... ttggaattagGGTTTGTGTATTAGCTCTGTGTTATCAATGGAGACACAGCCGCAGCAACCA
EST: gi|116475757|gb|EG518349.1|EG518349
EST:     CCAAATCAAAGCCTTCTTCGAGATTTTGCGCATTCCTCGTTTTCTAATTC                         GGTTTGTGTATTAGCTCTGTGTTATCAATGGAGACACAGCCGCAGCAACCA
genomic: CCAAATCAAAGCCTTCTTCGAGATTTTGCGCATTCCTCGTTTTCTAATTCgtaagtttct ... ttggaattagGGTTTGTGTATTAGCTCTGTGTTATCAATGGAGACACAGCCGCAGCAACCA