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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGAACCGCTTATTGTTTCTGGTGAATGTCGTATTTGTTCTGATGAGTCTCCTGTTGAGAATCTTGAGAGCCCTTGTGCTTGCAGTGGCAGCCTAAAGgttagttttcatcatcatctaattcttaaaccatttggtctatattgagcaatggctttgttctagaataattgactgttgacgaattttttgttatgtttttgaccag

Basic information

species Arabidopsis thaliana
transcript AT2G02960.5
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02960.4 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os11g38800.1 (Oryza sativa), 5'ss of exon 2
GAATGAACCGCTTATTGTTTCTGGTGAATGTCGTATTTGTTCTGATGAGTCTCCTGTTGAGAATCTTGAGAGCCCTTGTGCTTGCAGTGGCAGCCTAAAGgttagttttcatcatcatctaattcttaaaccatttggtctatattgagcaatggctttgttctagaataattgactgttgacgaattttttgttatgtttttgac-cag-
| | || ||||| ||     | |  || || ||||| ||    || |||  |    |  |||| || ||||  ||||||||||||||||||||||| |||||     | | || || | | ||  |    |||| | |  |||         |   | |||||  |||  ||| | ||| | |   || ||  | |||   |  |   || 
GGAGGAGCCGCTCATCCAGGCGGCGGAGTGCCGTATATGCCAGGAGGAGGATAGCATCAAGAACCTCGAGAAGCCTTGTGCTTGCAGTGGCAGCCTCAAGgtccagctcc-tcctcttttgatgttatttccatcttggatatg-------gttcttatgttcctgaa--att-attgtaggcagcttgttgttcatgcagtgcatgtagt