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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGAGACTTTTTCTCTCATCGTCGTTGTTTGAATTCTCCGGCTGAGAGATGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctctctcttgttctctaatttctgttctacgatgattcgttgctagatccattgattttagtttcttttcagatgttatcatcatcctttgga...

Basic information

species Arabidopsis thaliana
transcript AT2G02760.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116454941|gb|EG497533.1|EG497533
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACA                         AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGA
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGA
EST: gi|164079830|gb|ES026969.1|ES026969
EST:     TTTTCGCACAACA                         AGTAAGAGAAGGATGTCGA-TCCAGCGAGGAAGAGATTGATGAGGGATTTC
genomic: TTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
EST: gi|301503183|gb|HO208723.1|HO208723
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACA                         AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
EST: gi|116454990|gb|EG497582.1|EG497582
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACA                         AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGA
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGA
EST: gi|116431365|gb|EG473957.1|EG473957
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACA                         AATAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
EST: gi|163994059|gb|ES105997.1|ES105997
EST:     CCTTTTCGCACAACA                         AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
genomic: CCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
EST: gi|116428641|gb|EG471233.1|EG471233
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACA                         AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
EST: gi|116454996|gb|EG497588.1|EG497588
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACA                         AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
EST: gi|125237718|gb|EL251803.1|EL251803
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTT-CGCACAACA                         AGTAAGAGAAGG
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGG
EST: gi|124757573|gb|EH847703.1|EH847703
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTCTTACCTTTTCGCACAACA                         AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGA
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGA
EST: gi|301502531|gb|HO208071.1|HO208071
EST:     TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACA                         AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC
genomic: TGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctc ... gatttgatagAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGGAGACTTTTTCTCTCATCGTCGTTGTTTGAATTCTCCGGCTGAGAGATGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAgtgagatctctctcttgttctctaatttctgttctacgatgattcgttgctagatccattgattttagtttcttttcagatgttatcatcatcctttgga

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