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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGTTAACCTAATTTGAGAAGCATATATATAAAACTCACATCGCCGCTGATAATTCCGCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcgtcgagtctcttctctccactcatcatctatcgatttatcgtcgttaatcattgaatctgggttgttgatctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G01250.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124709031|gb|EH800433.1|EH800433
EST:     GAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTG
genomic: GAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTG
EST: gi|125298874|gb|EL312959.1|EL312959
EST:     GCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
genomic: GCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
EST: gi|124994562|gb|EL066831.1|EL066831
EST:     CTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTT
genomic: CTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTT
EST: gi|164038660|gb|ES105123.1|ES105123
EST:     GAGAAATTGCGTTCGAATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTG
genomic: GAGAAATTGCGTTCG-ATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTG
EST: gi|125192361|gb|EL207315.1|EL207315
EST:     CCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAG
genomic: CCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAG
EST: gi|164026383|gb|ES177756.1|ES177756
EST:     GAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTAGAGTCAAAGGTTGTAGTTCCAGAGTCGGTG
genomic: GAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTT-GAGTCAAAGGTTGTAGTTCCAGAGTCGGTG
EST: gi|125246906|gb|EL260991.1|EL260991
EST:     TCTGAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAG
genomic: TCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAG
EST: gi|124863435|gb|EH947872.1|EH947872
EST:     GAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
genomic: GAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
EST: gi|164113112|gb|ES111230.1|ES111230
EST:     GCTGATAATTCCGCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGG
genomic: GCTGATAATTCCGCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGG
EST: gi|164084736|gb|ES148128.1|ES148128
EST:     TCTGAG-AATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCC
genomic: TCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCC
EST: gi|152034121|gb|BP868106.2|BP868106
EST:     CCTCTGCAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
genomic: CCTCTG-AGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
EST: gi|125156507|gb|EL186085.1|EL186085
EST:     GCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTT
genomic: GCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTT
EST: gi|163999266|gb|ES180788.1|ES180788
EST:     GCCTCTGAGAAATTGCGTTCGATTACNGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAG
genomic: GCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAG
EST: gi|164225087|gb|EL978120.1|EL978120
EST:     GAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAA
genomic: GAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAA
EST: gi|164202796|gb|ES173126.1|ES173126
EST:     GAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTG
genomic: GAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAA-TGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTG
EST: gi|152038370|gb|BP815237.2|BP815237
EST:     TCTGAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
genomic: TCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
EST: gi|164027063|gb|ES015113.1|ES015113
EST:     GCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAG
genomic: GCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAG
EST: gi|164196558|gb|ES105732.1|ES105732
EST:     GAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTG
genomic: GAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTG
EST: gi|164162916|gb|ES177466.1|ES177466
EST:     GCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCC
genomic: GCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCC
EST: gi|125115671|gb|EL165536.1|EL165536
EST:     ACAGCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
genomic: ACAGCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
EST: gi|47828829|gb|CK118513.1|CK118513
EST:     GCTCCACAGAG                         GATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG
genomic: GCTCCACAGAGgttagtgtcg ... tgatctgcagGATTCGGAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTAGTTAACCTAATTTGAGAAGCATATATATAAAACTCACATCGCCGCTGATAATTCCGCCTCTGAGAAATTGCGTTCGATTACAGCTCCACAGAGgttagtgtcgtcgagtctcttctctccactcatcatctatcgatttatcgtcgttaatcattgaatctgggttgttgatctgcag

- - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC