1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGGAAGAAGAAGACGATGAAATTGGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAGgtaataatgtcaattctttctatgtatctactttggtacataaaacattgtcgctcacataaattttgatccgttgttctctcag
species | Arabidopsis thaliana |
transcript | AT2G01090.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAG AGTTCAGGTCAAGCTTTCTTTCCAATTTCGCCAEST: gi|124975562|gb|EL049044.1|EL049044
genomic: TGGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAGgtaataatgt ... gttctctcagAGTTCAGGTCAAGCTTTCTTTCCAATTTCGCCA
EST: TGGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAG AGTTCAGGTCAAGCEST: gi|124992121|gb|EL064390.1|EL064390
genomic: TGGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAGgtaataatgt ... gttctctcagAGTTCAGGTCAAGC
EST: GGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAG AGTTCAGGTCAAGCTTTCTTTCCAATTTCGCCAEST: gi|124851288|gb|EH935725.1|EH935725
genomic: GGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAGgtaataatgt ... gttctctcagAGTTCAGGTCAAGCTTTCTTTCCAATTTCGCCA
EST: GGAAATCGAATACGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAG AGTTCAGGTCAAGCTTTCTTTCCAATTTCGCCATEST: gi|125312355|gb|EL326440.1|EL326440
genomic: GGAAATCGAAT-CGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAGgtaataatgt ... gttctctcagAGTTCAGGTCAAGCTTTCTTTCCAATTTCGCCAT
EST: GAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAG AGTTCAGGTCAAGCTTTCTTTCCAATTTCGCCATGCCAGAAGEST: gi|124827630|gb|EH912496.1|EH912496
genomic: GAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAGgtaataatgt ... gttctctcagAGTTCAGGTCAAGCTTTCTTTCCAATTTCGCCATGCCAGAAG
EST: TGGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAG AGTTCAGGTCAAGCTTTCTTTCCAA
genomic: TGGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAGgtaataatgt ... gttctctcagAGTTCAGGTCAAGCTTTCTTTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAAGAAGAAGACGATGAAATTGGAGGAAATCGAATCGAATCGAAACATTTAGGGTTCCTCCTTCCTTGAGgtaataatgtcaattctttctatgtatctactttggtacataaaacattgtcgctcacataaattttgatccgttgttctctcag
- - - - - - - - - - - TGGAGG
- - - - - - - - - - - - GGAGGA