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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATCTACGTGCATCCACCTCTCTCTTCTTCTTCTTGTGACCACTCTTCCTGTCTGTTCACTGgttaggagatctctatccctctctctctgatcctttttgtttctttctgatttattgtatcgctctctttgaaaaaccttaagagttgtctgattttggcgatttctgatttgttgttgttgttgtttgatcggatctcggcattttctag

Basic information

species Arabidopsis thaliana
transcript AT1G78900.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482298|gb|EG524890.1|EG524890
EST:     GTGACCACTCTTCCTGTCTGTTCACTG                         GAGGTGAATTTTGANNNNNNNGGCCGATCGGATTTGAGTTTTTGAATCTCT
genomic: GTGACCACTCTTCCTGTCTGTTCACTGgttaggagat ... cattttctagGAGGTGAATTTTGATTTTTTTGGCCGATCGGATTTGAGTTTTTGAATCTCT
EST: gi|301502302|gb|HO207842.1|HO207842
EST:     CTCTTCCTGTCTGTTCACTG                         GAGGTGAATTTTGANNNNNNNGGCCGATCGGATTTGAGTTTTTGAATCTCT
genomic: CTCTTCCTGTCTGTTCACTGgttaggagat ... cattttctagGAGGTGAATTTTGATTTTTTTGGCCGATCGGATTTGAGTTTTTGAATCTCT
EST: gi|116415256|gb|EG457848.1|EG457848
EST:     TCCACCTCTCTCTTCTTCTTCTTGTGACCACTCTTCCTGTCTGTTCACTG                         GAGGTGAATTTTGANNNNNNNGGCCGATCGGATTTGAGTTTTTGAATCTCT
genomic: TCCACCTCTCTCTTCTTCTTCTTGTGACCACTCTTCCTGTCTGTTCACTGgttaggagat ... cattttctagGAGGTGAATTTTGATTTTTTTGGCCGATCGGATTTGAGTTTTTGAATCTCT