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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAAAAGGCTTATGAATTGTCAACACTTTGTGACATCGATCTTGCCCTCCTCATGTTCTCTCCCTCTGATCGACTATGTCTCTTTTCCGGTCAAACAAGgtatgtccatttcttcttctagaacgttccatgctcttctagaatcttctccttaggctttttcatcttaattaaagtgtaaccatgttttgcatataca...

Basic information

species Arabidopsis thaliana
transcript AT1G77950.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77950.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S313_41V6.1 (Physcomitrella patens), 5'ss of exon 1
---TAAAAAAGGCTTATGAATTGTCAACACTTTGTGACATCGATCTTGCCCTCCTCATGTTCTCTCCCTCTGATCGACTATGTCTCTTTTCCGGTCAAACAAGgtatgtccatttcttcttctagaacgttccatgctcttctagaatcttctccttaggctttttcatcttaattaaagtgtaaccatgtt-ttgcatataca----
   | || ||||||||||||||||||   ||||||||||||||||| || ||| |  |||| ||||| || |     ||   |      | | || |    |||   |||| |   || ||    || |    |  | | | | || ||| |         || | |    |  || ||||||||||   |  |  | ||   |    
TTATTAAGAAGGCTTATGAATTGTCAGTGCTTTGTGACATCGATCTCGCACTCATAGTGTTTTCTCCGTCGGGGAAGCT---TACACAGTACAGTAATTGCAGgcgagtccctcaatttttacccaatg----aaacaccttt-gattctgcatagcgatgttgtactagatggttcaagtgtaacctaatggtcacctaggaagttc