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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGATTTCATCGCCGGAGAGGATCTTTCTCCGTCTACGTATGCCCTTTCGTATACGCGTTTCGTGTTTTGATTTTCCCCGAAACCTTTCGTTGTTCTGgtgagaacctggcccatgtttttgaatctaatctactatatcggtttctcctgtggtgatgattgcgaattgaattagaaatcgtaggttgatttcttgt...

Basic information

species Arabidopsis thaliana
transcript AT1G75400.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475675|gb|EG518267.1|EG518267
EST:     CGTATACGCGTTTCGTGTTTTGATTTTCCCCGAAACCTTTCGTTGTTCTG                         GGTTACTGTGTGAGGAAGGACGTGCAAATTTGTTTGGAAGTTGTGTTAAGT
genomic: CGTATACGCGTTTCGTGTTTTGATTTTCCCCGAAACCTTTCGTTGTTCTGgtgagaacct ... cttactgcagGGTTACTGTGTGAGGAAGGACGTGCAAATTTGTTTGGAAGTTGTGTTAAGT
EST: gi|86069446|gb|DR365203.1|DR365203
EST:     CGTATACGCGTTTCGTGTTTTGATTTTCCCCGAAACCTTTCGTTGTTCTG                         GGTTACTGTGTGAGGAAGGACGTGCAAATTTGTTTGGAAGTTGTGTTAAGT
genomic: CGTATACGCGTTTCGTGTTTTGATTTTCCCCGAAACCTTTCGTTGTTCTGgtgagaacct ... cttactgcagGGTTACTGTGTGAGGAAGGACGTGCAAATTTGTTTGGAAGTTGTGTTAAGT
EST: gi|86069447|gb|DR365204.1|DR365204
EST:     CGTATACGCGTTTCGTGTTTTGATTTTCCCCGAAACCTTTCGTTGTTCTG                         GGTTACTGTGTGAGGAAGGACGTGCAAATTTGTTTGGAAGTTGTGTTAAGT
genomic: CGTATACGCGTTTCGTGTTTTGATTTTCCCCGAAACCTTTCGTTGTTCTGgtgagaacct ... cttactgcagGGTTACTGTGTGAGGAAGGACGTGCAAATTTGTTTGGAAGTTGTGTTAAGT