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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGTTTCAGAGCTCTTCGATCTTCTTCTTGATCGATCTACGTGCCACTGTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCgtaagtgaatcaaaaactgtttacaatctttctaattattgatcatcatcatcatcaaaatatttgtgaatatctatggtataattcgatgatcattgat...

Basic information

species Arabidopsis thaliana
transcript AT1G75380.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124704931|gb|EH796333.1|EH796333
EST:     GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATC                         GAAGGAAGATGAGATCGGTTCAAGCACCAGTTG
genomic: GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCgtaagtgaat ... ttgattgaagGAAGGAAGATGAGATCGGTTCAAGCACCAGTTG
EST: gi|125226035|gb|EL240120.1|EL240120
EST:     TTATTACTCACGAAATC                         GAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
genomic: TTATTACTCACGAAATCgtaagtgaat ... ttgattgaagGAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
EST: gi|86040912|gb|DR336667.1|DR336667
EST:     GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATC                         GAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
genomic: GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCgtaagtgaat ... ttgattgaagGAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
EST: gi|86040905|gb|DR336660.1|DR336660
EST:     GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATC                         GAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
genomic: GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCgtaagtgaat ... ttgattgaagGAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
EST: gi|86040903|gb|DR336658.1|DR336658
EST:     GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATC                         GAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
genomic: GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCgtaagtgaat ... ttgattgaagGAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
EST: gi|86040893|gb|DR336648.1|DR336648
EST:     GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATC                         GAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
genomic: GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCgtaagtgaat ... ttgattgaagGAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
EST: gi|86040911|gb|DR336666.1|DR336666
EST:     GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATC                         GAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
genomic: GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCgtaagtgaat ... ttgattgaagGAAGGAAGATGAGATCGGTTCAAGCACCAGTTGTTTGTCCTGCAATTCGAC
EST: gi|125272115|gb|EL286200.1|EL286200
EST:     GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATC                         GAAGGAAGATGAAGATCGGTTCAAGCACCAGTTGTTTGTCCT
genomic: GTTTATACCATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCgtaagtgaat ... ttgattgaagGAAGGAAGATGA-GATCGGTTCAAGCACCAGTTGTTTGTCCT