1 5' 3' | 2 5' 3' |
TTATAATTTGCCTAAACATTGTGATAATAATGAAGTCCTTAAAGCTCTTTGTGTTGAAGCTGGTTGGGTTGTTGAAGAAGATGGTACTACTTATCGCAAGgtgaagactttctccattttttccagatctgagcttgttttattgatgtttttgatgtttgaatctgaattcgttgatttcaattgtggttaaatgggtt...
species | Arabidopsis thaliana |
transcript | AT1G75080.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTTGGGTTGTTGAAGAAGATGGTACTACTTATTCGCAAG GGATGCAAGCCTTTACCTGGTGAGATAGCTGGGACTTCATCTCGAGTAACEST: gi|125043221|gb|EL115490.1|EL115490
genomic: TGGTTGGGTTGTTGAAGAAGATGGTACTACTTA-TCGCAAGgtgaagactt ... ggagtatcagGGATGCAAGCCTTTACCTGGTGAGATAGCTGGGACTTCATCTCGAGTAAC
EST: TGGTTGGGTTGTTGAAGAAGATGGTACTACTTATCGCAAG GGATGCAAGCCTTTACCTGGTGAGATAGCTGGGACTTCATCTCGAGTAACT
genomic: TGGTTGGGTTGTTGAAGAAGATGGTACTACTTATCGCAAGgtgaagactt ... ggagtatcagGGATGCAAGCCTTTACCTGGTGAGATAGCTGGGACTTCATCTCGAGTAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATAATTTGCCTAAACATTGTGATAATAATGAAGTCCTTAAAGCTCTTTGTGTTGAAGCTGGTTGGGTTGTTGAAGAAGATGGTACTACTTATCGCAAGgtgaagactttctccattttttccagatctgagcttgttttattgatgtttttgatgtttgaatctgaattcgttgatttcaattgtggttaaatgggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcc