1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGATGGAGACAAGAGCGTCTATGGTGGTAAAGGTGTATTACAGGCTATTAAAAACATCAATGAACTTGTGGCTCCAAAACTCATTGGAGTTGACGTTAGgtgagaataagaattcgttcctcaatctaaatgaacatataaacgtcgtgatttggagttggtatgcttagttagatagaaatcttcggagttgttttag...
species | Arabidopsis thaliana |
transcript | AT1G74030.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAAAACATCAATGAACTTGTGGCTCCAAAACTCATTGGAGTTGACGTTAG GAACCAAGCTGATGTCGATGCTCTTATGCTGGAACTGGATGGGACCCCAAAEST: gi|47831124|gb|CK120808.1|CK120808
genomic: AAAAACATCAATGAACTTGTGGCTCCAAAACTCATTGGAGTTGACGTTAGgtgagaataa ... tttctttaagGAACCAAGCTGATGTCGATGCTCTTATGCTGGAACTGGATGGGACCCCAAA
EST: AAAAACATCAATGAACTTGTGGCTCCAAAACTCATTGGAGTTGACGTTAG GAACCAAGCTGATGTCGATGCTCTTATGCTGGAACTGGATGGGACCCCAAA
genomic: AAAAACATCAATGAACTTGTGGCTCCAAAACTCATTGGAGTTGACGTTAGgtgagaataa ... tttctttaagGAACCAAGCTGATGTCGATGCTCTTATGCTGGAACTGGATGGGACCCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATGGAGACAAGAGCGTCTATGGTGGTAAAGGTGTATTACAGGCTATTAAAAACATCAATGAACTTGTGGCTCCAAAACTCATTGGAGTTGACGTTAGgtgagaataagaattcgttcctcaatctaaatgaacatataaacgtcgtgatttggagttggtatgcttagttagatagaaatcttcggagttgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatagaaa