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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATCGACGTTGATAGCGATAATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACACTCATGgtttgttctaccttcttctctcatctgttttctcattttccttttgaaatttcgaataacttttcggttttgtattcgattattatcttgcaatttcaatcctttataaaagcttttgttatcttgcaattttgttatcgaataaaaccctaaatggaattgtataaaataacag

Basic information

species Arabidopsis thaliana
transcript AT1G73010.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73010.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G01410.1 (Glycine max), 5'ss of exon 1
CATCATCGACGTTGATAGCGATAATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACACTCATGgtttgttctacct--tcttctctcatctgttttctcattttccttttgaaatttcgaataacttttcggttttgtattcgattattatcttgca-atttcaatcctttataa--aagcttttgttatcttgcaattttgt-tatcgaataaaaccctaaatggaattgtataaaataacag
|||  |||| || || || || || ||||| ||||| ||| | || ||||| ||||||||||| || ||||| |||||||||||||||||| | ||||||||  |    |  |  | |  | |||  |||| | |  |||   |       ||   || |    ||   || | | ||| | ||| |  ||||| | | || |   |||||   | |  |   ||| |     ||||||| | |||  |       || |                     
CATTGTCGATGTCGACAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagcatttggtgtcttgtcacatgttctgttttttcaataccatggttctcaaaagtccttt--ttatat-ttcaaatataactttgcatactgcattgtcttataggcatgaataacttagccgaggattttgtgtttcggttttggatttatag--------------------

upper sequence: AT1G73010.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G20820.1 (Glycine max), 5'ss of exon 1
CATCATCGACGTTGATAGCGATAATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACACTCATGgtt--tgttctaccttcttctctcatctgttttctcattttccttttgaaatttcgaataacttttcggttttgtattcgattattatcttgcaatttcaatcctttataaaagcttttgttatcttgcaattttgttatcgaataaaaccctaaatggaattgtataaaataacag
|||  |||| || || || || || ||||| ||||| ||| | || ||||| ||||||||||| || ||||| |||||||||||||||||| | ||||||||     ||     |  |    |  | |||||  |  ||||  ||||    | | | | ||  ||       || | |   | |  || ||    | |   || |                                                                        
CATTGTCGATGTCGACAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcatttcgtgtcatgtctttgtttgtttgtttgtttttttttttttctgtagcaaaaacttaga----tgcaattcgtcac-atgtttttgtgttgttctt------------------------------------------------------------------------

upper sequence: AT1G73010.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G01430.1 (Glycine max), 5'ss of exon 1
CATCATCGACGTTGATAGCGATAATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACACTCATGgtttgt-tctaccttcttctctcatctgttttctcattttccttttgaaatttcgaataacttttcggttttgtattcgattattatcttgcaatttcaatcctttataaaagcttttgttatcttgcaattttgttatcgaataaaaccctaaatggaattgtataaaataacag
|||  |||| || ||||| || || ||||| ||||| ||| | || ||||| ||||||||||| || ||||| |||||||||||||||||| | ||||||||  |  | |    ||   |||      ||||||  |||   |    |||  | |  |    |||      |||  ||  | ||| |  | ||||   |||                                                                           
CATTGTCGATGTCGATAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcatttggtgtcacgtctttgggtttttcttttttcagtagataaaacttggttgcaatttgtcgcatgttctcagt-attgttcttcaatcaaaat---------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471534|gb|EG514126.1|EG514126
EST:     CTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACACTCATG                         GACCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTGAGGAGATC
genomic: CTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACACTCATGgtttgttcta ... aaaataacagGACCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTGAGGAGATC