Sequence
atgc intronic sequence ATGC exonic sequenceGTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGgtaattatattaatcaacgtggattttgtataatgattatcattgattaatcctttgcatggaatgacagtaaattgtctagttatgacataagttttga...
Basic information
species | Arabidopsis thaliana |
transcript | AT1G71930.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G71930.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G36050.1 (Glycine max), 5'ss of exon 2
GTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGgtaattatat-taatcaacgtggattttgtataatgattatcattgattaatcctttgcatggaatgacagtaaattgtctagttatgacataagttttga-------------------------------------------------------------------------------------------------
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GTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGgtatatatatatatttagttatcacaatgcaatttgcttgacaccaatatgttcacttaaagggac-ataattaatcatctttaagtaattatagttcaaaaaaacaaaagtcaactttagaaatttgataaactcatggagcaaagacatatcatgcatatgacattatagttacaagatgtgcttgaaatatgcag
upper sequence: AT1G71930.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G31550.1 (Glycine max), 5'ss of exon 2
GTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGgtaattatattaatcaacgtggattttgtataatgattatcattgattaatcctttgcatggaatgacagtaa--attgtctagttatgacataagttttga
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GTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCTTGGGACATACAAGgtatatatattagttatcacaatgcaattatctagctagacacatgtt--ctcttaaaggggcctaataataatctttaagtaattataatataattcaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86053054|gb|DR348811.1|DR348811EST: TGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAG CGAGGTGTAAACTAGGDKTATGAAGAGCAAAACGAGTGGTACTTCTTTAGT
genomic: TGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGgtaattatat ... acatttgcagCGAGGTGTAAACTAGGG-TATGAAGAGCAAAACGAGTGGTACTTCTTTAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGgtaattatattaatcaacgtggattttgtataatgattatcattgattaatcctttgcatggaatgacagtaaattgtctagttatgacataagttttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagtaaa