Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGGAAGAAGATGAAGCAGCGCTTCACCTTCTTCTTCGTTATCTTCTCTTAATAATCCCCAATGGCTTCATCATCATCCCAACGACGCTGCGTTTTTGgtaactcactcttcttcttcttcttccattatcactctgtgaattctcttcgattttggattcaattggcttaaagttttcgactttcttcgtctattttag

Basic information

species Arabidopsis thaliana
transcript AT1G71800.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71800.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G36350.1 (Glycine max), 5'ss of exon 1
-----------AGCAGGAAGAAGATGAAGCAGCGCTTCACCTTCTTCTTCGTTATCTTCTCTTAATAATCCCCAATGGCTTCATCATCATCCCAACGACGCTGCGTTTTTGgtaactcactcttcttcttcttcttccattatcactctgtgaattctcttcgattttggattcaattggcttaaagttttcgactttcttcgtctattttag--
           || |||||||||||| ||||||||||||||||||||| |         |  |  | ||  |  |||||  | ||    ||||| |  ||||||||||| ||||   | || |    ||   |||  |    || ||||  | | | |  | | | ||| |   |   |   |  |  |      | | ||  |  |||||    
TAATGGTTCTGAGGAGGAAGAAGATGGAGCAGCGCTTCACCTTCTTCTGC---------TGATGTTGATTTC--ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGgtattcctctttctcactctctctctc----tctctcttcgcacttttctggttattgaagaaatgggaaatcgaaataaaatatattttttttaattttctac

upper sequence: AT1G71800.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G31220.2 (Glycine max), 5'ss of exon 1
--------------AGCAGGAAGAAGATGAAGCAGCGCTTCACCTTCTTCTTCGTTATCTTCTCTTAATAATCCCCAATGGCTTCATCATCATCCCAACGACGCTGCGTTTTTGgtaactcactcttcttcttcttcttccattatcactctgtgaattctcttcgattttggattcaattggcttaaagttttcgactttct-tcgtctattttag-----
              || |||||||||||| ||||||||||||||||||||| |            |  | ||  |  |||||  | ||    ||||| |  ||||||||||| ||||   ||| |    |||   |||||      |||| |     || |    |   | |||   ||| |   |||| | ||  | ||  | |  | | |||||      
GAATAATGGTTCTGAGGAGGAAGAAGATGGAGCAGCGCTTCACCTTCTTCTGC------------TGTTGATTTC--ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGgtattccacacactctctctctcttcg-----cacttttctggttattgaagtaatggga---aatcgaaataaaatatttaatttcttatttttttttttaatttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876779|gb|AU237610.1|AU237610
EST:     TTAATAATCCCCAATGGCTTCATCATCATCCCAACGACGCTGCGTTTTTG                         TTGGGAACATTCCTTACGACGCGACCGAGGAACAACTTAGAGAAATTTGTG
genomic: TTAATAATCCCCAATGGCTTCATCATCATCCCAACGACGCTGCGTTTTTGgtaactcact ... tctattttagTTGGGAACATTCCTTACGACGCGACCGAGGAACAACTTAGAGAAATTTGTG