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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTAAAATTACTTGTTGTTGTTTGTATTCATTAGGAAAAAGACGAAATGGCAACGGAATCGTACGAAGCCGCCATTAAAGGACTCAATGATCTTCTCAGgtacacactctctctgactcatagtaccatcattagaaagtgtcggcatattcctcttttttttcctcccacaatttctccataatcaacgccaaaatca...

Basic information

species Arabidopsis thaliana
transcript AT1G70410.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125224024|gb|EL238109.1|EL238109
EST:     AAAGGACTCAATGATCTTCTCAG                         TACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGATCAAAGCGTTGAC
genomic: AAAGGACTCAATGATCTTCTCAGgtacacactc ... ttttttacagTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGATCAAAGCGTTGAC
EST: gi|124715475|gb|EH806877.1|EH806877
EST:     CCGCCATTAAAGGACTCAATGATCTTCTCAG                         TACGAAAGCGGATCTCG
genomic: CCGCCATTAAAGGACTCAATGATCTTCTCAGgtacacactc ... ttttttacagTACGAAAGCGGATCTCG
EST: gi|124958218|gb|EL032977.1|EL032977
EST:     GCCGCCATTAAAGGACTCAATGATCTTCTCAG                         TACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGATCAAAGCGTTGAC
genomic: GCCGCCATTAAAGGACTCAATGATCTTCTCAGgtacacactc ... ttttttacagTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGATCAAAGCGTTGAC
EST: gi|124774896|gb|EH865025.1|EH865025
EST:     TACGAAGCCGCCATTAAAGGACTCAATGATCTTCTCAG                         TACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGATCAAAGCGTTGAC
genomic: TACGAAGCCGCCATTAAAGGACTCAATGATCTTCTCAGgtacacactc ... ttttttacagTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGATCAAAGCGTTGAC
EST: gi|124891863|gb|EH970765.1|EH970765
EST:     GCAACGGAATCGTACGAAGCCGCCATTAAAGGACTCAATGATCTTCTCAG                         TACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGA
genomic: GCAACGGAATCGTACGAAGCCGCCATTAAAGGACTCAATGATCTTCTCAGgtacacactc ... ttttttacagTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGA