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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGTAGTGGTTCCAATGCCATTCACTACTTATACATACATAGCTGATCCCATCAACGTTGAATATGTCCTGAAAACAAACTTCTCCAATTACCCCAAGgtgaaaaaagctctttatatcaatatcatgtatatgttttgttgtgactttgattttttgttgtatatcag

Basic information

species Arabidopsis thaliana
transcript AT1G69500.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G69500.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os03g07250.1 (Oryza sativa), 5'ss of exon 1
AACAGTAGTGGTTCCAATGCCATTCACTACTTATACATACATAGCTGATCCCATCAACGTTGAATATGTCCTGAAAACAAACTTCTCCAATTACCCCAAGgtgaaaaaagc------tctttatatcaatatcatgtatatgttttgttgtgactttgattttttgttgtatatcag-----------
 || ||    ||    ||||| |||||  | || || ||||| || || ||  | ||||| ||  |||||||||| || |||||| |||||||||||||||| ||| || |      |||| |    | | | |  | |   ||     ||        |          || || |           
GACGGTGACCGTCGACATGCCTTTCACCTCCTACACCTACATTGCCGACCCGGTGAACGTCGAGCATGTCCTGAAGACCAACTTCACCAATTACCCCAAGgtaaaagaaccataggatcttcagtgtactgtaaaatgtgccttgcacagtactaacactgacacaaaaaatgtctgaaaatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878849|gb|AU239680.1|AU239680
EST:     CCATCAACGTTGAATATGTCCTGAAAACAAACTTCTCCAATTACCCCAAG                         GGAGAGACTTATCATTCTTATATGGAAGTATTGTTGGGAGATGGGATTTTC
genomic: CCATCAACGTTGAATATGTCCTGAAAACAAACTTCTCCAATTACCCCAAGgtgaaaaaag ... tgtatatcagGGAGAGACTTATCATTCTTATATGGAAGTATTGTTGGGAGATGGGATTTTC
EST: gi|86062506|gb|DR358263.1|DR358263
EST:     CCATCAACGTTGAATATGTCCTCAAAACCAACTTCTCCAATTACCCCAAG                         GGAGAGACTTATCATTCATATATGGAAGTTTTGTTGGGAGATGGGATTTTC
genomic: CCATCAACGTTGAATATGTCCTGAAAACAAACTTCTCCAATTACCCCAAGgtgaaaaaag ... tgtatatcagGGAGAGACTTATCATTCTTATATGGAAGTATTGTTGGGAGATGGGATTTTC