1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGAAATGTCATGAATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCGAGCTTCCTTTATGTTTAGAGCTTGTCACTCAAGgtaataataatccaatcaaaatctccaatttttaaacaagtctcttacaaatcttgatggggttttgttatgttttgtttctgtatag
species | Arabidopsis thaliana |
transcript | AT1G68670.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAAGTCTTTCAACGCGAGCTTCCTTTATGTTTAGAGCTTGTCACTCAAG CGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACAACTACATCAGEST: gi|125221618|gb|EL235703.1|EL235703
genomic: CCAAGTCTTTCAACGCGAGCTTCCTTTATGTTTAGAGCTTGTCACTCAAGgtaataataa ... ttctgtatagCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACAACTACATCAG
EST: CCAAGTCTTTCAACGCGAGCTTCCTTTATGTTTAGAGCTTGTCACTCAAG CGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACAACTAEST: gi|124961113|gb|EL035697.1|EL035697
genomic: CCAAGTCTTTCAACGCGAGCTTCCTTTATGTTTAGAGCTTGTCACTCAAGgtaataataa ... ttctgtatagCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACAACTA
EST: TTTAGAGCTTGTCACTCAAG CGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACAACTACATCAG
genomic: TTTAGAGCTTGTCACTCAAGgtaataataa ... ttctgtatagCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACAACTACATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAAATGTCATGAATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCGAGCTTCCTTTATGTTTAGAGCTTGTCACTCAAGgtaataataatccaatcaaaatctccaatttttaaacaagtctcttacaaatcttgatggggttttgttatgttttgtttctgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT