1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTTATGACCCTGATTCTTCTGTTCAACTTTCTGATTCTGGTCACAAGGAAGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcctcaatcttttgctctgatattatcacttgagttaaatacgctgtttgatatatggttaacgaacaaataaaagagttaataatacaacaa...
species | Arabidopsis thaliana |
transcript | AT1G64970.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCSGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030501|gb|DR326254.1|DR326254
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030496|gb|DR326249.1|DR326249
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCNGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030505|gb|DR326258.1|DR326258
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030506|gb|DR326259.1|DR326259
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030474|gb|DR326227.1|DR326227
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030482|gb|DR326235.1|DR326235
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030497|gb|DR326250.1|DR326250
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCSGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAEST: gi|86030493|gb|DR326246.1|DR326246
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030502|gb|DR326255.1|DR326255
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCSGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGEST: gi|86030479|gb|DR326232.1|DR326232
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGG
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030484|gb|DR326237.1|DR326237
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030478|gb|DR326231.1|DR326231
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030504|gb|DR326257.1|DR326257
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTEST: gi|86030490|gb|DR326243.1|DR326243
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTT
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030492|gb|DR326245.1|DR326245
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030486|gb|DR326239.1|DR326239
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGEST: gi|86030476|gb|DR326229.1|DR326229
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTG
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGGTGTGGGEST: gi|86030485|gb|DR326238.1|DR326238
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGG-TGTGGG
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030500|gb|DR326253.1|DR326253
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030491|gb|DR326244.1|DR326244
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCNCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030494|gb|DR326247.1|DR326247
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGEST: gi|86030471|gb|DR326224.1|DR326224
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGG
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030483|gb|DR326236.1|DR326236
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAA-GATAAAGAAAGTAGTGEST: gi|86030477|gb|DR326230.1|DR326230
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTG
EST: GCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGNCGGTKKKKACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGEST: gi|86030488|gb|DR326241.1|DR326241
genomic: GCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTT-ACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGG
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030472|gb|DR326225.1|DR326225
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGAEST: gi|86030498|gb|DR326251.1|DR326251
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
EST: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTG ATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
genomic: AGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcc ... ttgaaaaaagATGAAGAGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTATGACCCTGATTCTTCTGTTCAACTTTCTGATTCTGGTCACAAGGAAGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGgttagcttcctcaatcttttgctctgatattatcacttgagttaaatacgctgtttgatatatggttaacgaacaaataaaagagttaataatacaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaac