1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCGCAGCTAACTGAAGTTTCACAGCAGTTCGAGAGATTCAAGGCGGCGTTTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatctctctctcttctttgaaccctaatttgtttcaattcacttctttgcatatctgcttattgaaccaactttgggaaaattgatgggttatgt...
species | Arabidopsis thaliana |
transcript | AT1G64520.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486373|gb|EG528965.1|EG528965
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486364|gb|EG528956.1|EG528956
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486368|gb|EG528960.1|EG528960
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116410781|gb|EG453373.1|EG453373
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486371|gb|EG528963.1|EG528963
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486376|gb|EG528968.1|EG528968
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486365|gb|EG528957.1|EG528957
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116410784|gb|EG453376.1|EG453376
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486359|gb|EG528951.1|EG528951
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486357|gb|EG528949.1|EG528949
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTEST: gi|116486361|gb|EG528953.1|EG528953
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTCCGAGAATTCACCTEST: gi|125243444|gb|EL257529.1|EL257529
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCT
EST: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAG GTTCTTCTTACCAAATTCACAAGTCTTCCT
genomic: TTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatct ... tgttcttcagGTTCTTCTTACCAAATTCACAAGTCTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGCAGCTAACTGAAGTTTCACAGCAGTTCGAGAGATTCAAGGCGGCGTTTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAAGgtctacatctctctctcttctttgaaccctaatttgtttcaattcacttctttgcatatctgcttattgaaccaactttgggaaaattgatgggttatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaaat