1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCTCTCGCTTGTGGTTCTTTGATGATGCTTGTCTCTTGGGCTACTAGAATCGCAGATGCTCCTAAAACTGATCTCGAGTTCTGGAAAACTCTGTTCCCGgtaagtaattagggtttattgtgtgtagttgttgcctcaaaagtttcaatcttttttttttacgattgagagctcagtttctggaatactctgtttttcc...
species | Arabidopsis thaliana |
transcript | AT1G61800.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCAGATGCTCCTAAAACTGATCTCGAGTTCTGGAAAACTCTGTTCCCG GTCGCTGTAGCACACACGATAGGACACGTTGCAGCAACAGTGAGTATGTCAEST: gi|116377047|gb|EG419639.1|EG419639
genomic: TCGCAGATGCTCCTAAAACTGATCTCGAGTTCTGGAAAACTCTGTTCCCGgtaagtaatt ... attcttcaagGTCGCTGTAGCACACACGATAGGACACGTTGCAGCAACAGTGAGTATGTCA
EST: TCGCAGATGCTCCTAAAACTGATCTCGAGTTCTGGAAAACTCTGTTCCCG GTCGCTGTAGCACACACGATAGGACACGTTGCAGCAACAGTGAGTATGTCAEST: gi|116447970|gb|EG490562.1|EG490562
genomic: TCGCAGATGCTCCTAAAACTGATCTCGAGTTCTGGAAAACTCTGTTCCCGgtaagtaatt ... attcttcaagGTCGCTGTAGCACACACGATAGGACACGTTGCAGCAACAGTGAGTATGTCA
EST: TCGCAGATGCTCCTAAAACTGATCTCGAGTTCTGGAAAACTCTGTTCCCG GTCGCTGTAGCACACACGATAGGACACGTTGCAGCAACAGTGAGTATGTCA
genomic: TCGCAGATGCTCCTAAAACTGATCTCGAGTTCTGGAAAACTCTGTTCCCGgtaagtaatt ... attcttcaagGTCGCTGTAGCACACACGATAGGACACGTTGCAGCAACAGTGAGTATGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCTCGCTTGTGGTTCTTTGATGATGCTTGTCTCTTGGGCTACTAGAATCGCAGATGCTCCTAAAACTGATCTCGAGTTCTGGAAAACTCTGTTCCCGgtaagtaattagggtttattgtgtgtagttgttgcctcaaaagtttcaatcttttttttttacgattgagagctcagtttctggaatactctgtttttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG