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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGCGAGATGGAGATCAACTTATCGTTACTCCGTTAGGAGCCGGAAGTGAAGTGGGTCGTTCCTGTGTTTACATGTCCTTCCGAGGCAAAAATATTCTGgtcagcttctccgttttgttctaatcaagcaaatgtgttttgattttgttgttggggcatgtcttatagttgattttggttgtgttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G61010.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv12s0035g00170.t01 (Vitis vinifera), 5'ss of exon 1
TTCGCGAGATGGAGATCAACTTATCGTTACTCCGTTAGGAGCCGGAAGTGAAGTGGGTCGTTCCTGTGTTTACATGTCCTTCCGAGGCAAAAATATTCTGgtcagcttctccgttttgttctaatcaagcaaatgt--gttttgattttgttgttggggcatgtcttatagttgattttggttgtgtt---gtgcag---------
  |  |||  ||||| || |  ||  |||| ||  |||| || |||| ||||||||| ||||||||||| ||||||||||    ||| ||||  ||  ||||   |      |  || ||||  |        ||   ||||| ||  | |  ||    ||| | || || ||  |||   || ||||   || |           
AACAAGAGTAGGAGACCAGCCGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtataccataatgcattattcttttattttggttgctagtttttatactttgttttcaacattttttttactttgtttctattttgttcctgttctatgacgatag

upper sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv12s0035g00030.t01 (Vitis vinifera), 5'ss of exon 1
-TTCGCGAGATGGAGATCAACTTATCGTTACTCCGTTAGGAGCCGGAAGTGAAGTGGGTCGTTCCTGTGTTTACATGTCCTTCCGAGGCAAAAATATTCTGgtcagcttctccgttttgttc--taatcaagcaaatgtgttttgattttgttgttggggcatgtcttatagttgattttggttgtgttgtgcag-----------------
 ||  | ||| ||||| || || ||  |||| ||  |||| || |||| ||||||||| ||||||||||| ||||||||||    ||| ||||  ||  ||||   |      |  || |||  | ||   |       ||||| ||  | |  ||  |  || | ||||| ||  ||| | || | || ||                    
ATTAACAAGA-GGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtataccataatgcattattcgtttattttggttgctagtttttatactttgttttcgatattttttataatttgttt-gtttctattttgttcctgttctgtgatgatag

upper sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv12s0035g00190.t01 (Vitis vinifera), 5'ss of exon 1
TTCGCGAGATGGAGATCAACTTATCGTTACTCCGTTAGGAGCCGGAAGTGAAGTGGGTCGTTCCTGTGTTTACATGTCCTTCCGAGGCAAAAATATTCTGgtcagcttc--tccgttttgttctaatcaagcaaatgtgttttgattttgttgttggggcatgtcttatagttgattttggttgtgttgtgcag-----------------
  |  |||| ||||| || || ||  |||| ||  |||| || |||| ||||||||| ||||||||||| ||||||||||    ||| ||||  ||  ||||   |     | |  | || | | |    |       ||||| ||  | |  ||  | ||| | || |   |   |||| || | || ||                    
AACAAGAGAAGGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtagaccataatgcactatgcttttactttggttgctagtttttatactttcattttgacatttttttttaatttgtttgtttctattttgttcccgttctatgatgatag