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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATTCACCTTCCTTTCGCCTTTTCGGGGGAATTTCTTCCAATCTGTTGGGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAACTAGCGAAAGgtctgattttgtttcgtaccctttgttcctaatggattcaattccacggattttatctgaattgagtttcttcgtagttgcttgttacgaattggatctc...

Basic information

species Arabidopsis thaliana
transcript AT1G55520.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035531|gb|BP857028.2|BP857028
EST:     GGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAACTAGCGAAAG                         AGAATGGCTGATCAAGGAACGGGAGGGAGCCAGCCAGTTGACCTTACTAAA
genomic: GGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAACTAGCGAAAGgtctgatttt ... cttatgttagAGAATGGCTGATCAAGGAACGGAAGGGAGCCAGCCAGTTGACCTTACTAAA
EST: gi|19874591|gb|AU235422.1|AU235422
EST:     GGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAACTAGCGAAAG                         AGAATGGCTGATCAAGGAACGGAAGGGAGCCAGCCAGTTGACCTTACTAAA
genomic: GGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAACTAGCGAAAGgtctgatttt ... cttatgttagAGAATGGCTGATCAAGGAACGGAAGGGAGCCAGCCAGTTGACCTTACTAAA
EST: gi|164058698|gb|ES161861.1|ES161861
EST:     GGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAACTAGCGAAAG                         AGAATGGCTGATCAAGGAACGGAAAGGAGCCAGCCAGTTGACCTTACTAAA
genomic: GGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAACTAGCGAAAGgtctgatttt ... cttatgttagAGAATGGCTGATCAAGGAACGGAAGGGAGCCAGCCAGTTGACCTTACTAAA