Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAATCGCTAGATTCCTTAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaacaatcttctgtttggtatttagtcttttagtctctatgatgagaatcactcgtaattgatatatcactagatttttcgatgtttaccgaatctttgattttgatttgatgttaaggtgtcttctagagtctgatctcttatatgatgttgatataatcattag

Basic information

species Arabidopsis thaliana
transcript AT1G54690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G54690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G111028_T01 (Zea mays), 5'ss of exon 2
-AAGAATCGCTAGATTCCTTAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaacaatcttctgtttggtatttagtcttttagtctctatgatgagaatcactcgtaattgatatatcactagatttttcgatgtttaccgaatctttgattttgatttgatgttaaggtgtcttctagagtctgatctcttatatgatgttgatataatcattag
   | ||||   | | ||| |||||||| ||||| || || || || || || || || ||||| || ||||||||||||||||| || |||||||| |||||||    |   |  || ||          ||| ||  | | ||  |   ||   |||| |   |||| |  |  | || |    | |||  |  || | |||  ||   ||  |  |                                                     
GTCGCATCGTGCGGTGCCTCAAAGCCGGCAAATATGCAGAGCGCGTCGGCGCTGG-GCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatcccccgacccctcttcc--------tctcttcatgtttacca---gatctactcttgtctgatct--cgtttgaatcccagttgtgaattgattgtttccttcgtatccgcag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86017303|gb|DR313049.1|DR313049
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017291|gb|DR313037.1|DR313037
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017294|gb|DR313040.1|DR313040
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|125264375|gb|EL278460.1|EL278460
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAG
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAG
EST: gi|86017290|gb|DR313036.1|DR313036
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017302|gb|DR313048.1|DR313048
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCANCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017296|gb|DR313042.1|DR313042
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACARGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017292|gb|DR313038.1|DR313038
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCASCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017297|gb|DR313043.1|DR313043
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017299|gb|DR313045.1|DR313045
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017300|gb|DR313046.1|DR313046
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017298|gb|DR313044.1|DR313044
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
EST: gi|86017295|gb|DR313041.1|DR313041
EST:     CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAG                         GTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC
genomic: CCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGgtaacaaaca ... taatcattagGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATC