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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTTCGTCTCGCCGCCGTCTTCGCCCTTACTCTCGCCACCACCGGCATTAGCGTCGGCTTCAATTTCCTCGGCCGTGATTTCTACAATTCTCTCGCCAgtacgaattcttcaactctctctctcatttctcacttttcaaaaacaacttgctctgttgatcctcttttctctgtgttcaatag

Basic information

species Arabidopsis thaliana
transcript AT1G54350.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475753|gb|EG518345.1|EG518345
EST:     TAGCGTCGGCTTCAATTTCCTCGGCCGTGATTTCTACAATTCTCTCGCCA                         ACAAAGACCAAGAGCAATTCACCAGGCAGTTGTTCTATTACCTCTGTGCTT
genomic: TAGCGTCGGCTTCAATTTCCTCGGCCGTGATTTCTACAATTCTCTCGCCAgtacgaattc ... tgttcaatagACAAAGACCAAGAGCAATTCACCAAGCAGTTGTTCTATTACCTCTGTGCTT