1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCGGACGTTCTTGATTCGGCTTTGTTGAGGCCTGGAAGGTTTGATCGACAGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTTCAGgttcttttcatagctgttttataaaggttactggtttgtctatggagttatgtgaatgattcttatttctctctatggggtttggttttattttag
species | Arabidopsis thaliana |
transcript | AT1G50250.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTTCAG GTTCATTCTAGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTTEST: gi|124968756|gb|EL042692.1|EL042692
genomic: AGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTTCAGgttcttttca ... tttattttagGTTCATTCTAGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTT
EST: AGAGTCAAGATTCTTCAG GTTCATTCTAGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTT
genomic: AGAGTCAAGATTCTTCAGgttcttttca ... tttattttagGTTCATTCTAGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGGACGTTCTTGATTCGGCTTTGTTGAGGCCTGGAAGGTTTGATCGACAGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTTCAGgttcttttcatagctgttttataaaggttactggtttgtctatggagttatgtgaatgattcttatttctctctatggggtttggttttattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA