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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAGAAAACCTTAATCAATCGAAATCTCAGTGTAACTAATCAATGGAGATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaattcattttcaacaattcattttctgtttgttattcatgaaatctgctgctgggttattttcgtgtttagtaaattggattatttttcctt...

Basic information

species Arabidopsis thaliana
transcript AT1G49670.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072167|gb|DR367924.1|DR367924
EST:     GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCG                         GTAGAGCTCTCTGNTTAGCTCTTGCAGAGAAAGGAGTTTTTG
genomic: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaa ... ttatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTG
EST: gi|125177094|gb|EL196395.1|EL196395
EST:     CCTGGTTTATCCGCCTCTCGTCACTGGCGGNGCCTCTGGGATCG                         GTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
genomic: CCTGGTTTATCCG-CTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaa ... ttatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
EST: gi|86072169|gb|DR367926.1|DR367926
EST:     GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCG                         GTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
genomic: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaa ... ttatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
EST: gi|86072168|gb|DR367925.1|DR367925
EST:     GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCG                         GTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
genomic: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaa ... ttatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG