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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGAGAAAGAGGAGAAAGAGTGAGCCAGATCTTCATCGTCGTGGTTCTTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaacctccgatctacttgttcttgtgttggatctcgattacgatttctaagttacttcaaaagttgtttccgatttgattttgattggaattt...

Basic information

species Arabidopsis thaliana
transcript AT1G49240.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86042721|gb|DR338476.1|DR338476
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042719|gb|DR338474.1|DR338474
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042715|gb|DR338470.1|DR338470
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|124974310|gb|EL047878.1|EL047878
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACC
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACC
EST: gi|86042705|gb|DR338460.1|DR338460
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042729|gb|DR338484.1|DR338484
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042724|gb|DR338479.1|DR338479
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042707|gb|DR338462.1|DR338462
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACYTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042714|gb|DR338469.1|DR338469
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042723|gb|DR338478.1|DR338478
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|47831799|gb|CK121483.1|CK121483
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042717|gb|DR338472.1|DR338472
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042704|gb|DR338459.1|DR338459
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042708|gb|DR338463.1|DR338463
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042730|gb|DR338485.1|DR338485
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042716|gb|DR338471.1|DR338471
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042728|gb|DR338483.1|DR338483
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042706|gb|DR338461.1|DR338461
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042718|gb|DR338473.1|DR338473
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042722|gb|DR338477.1|DR338477
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042726|gb|DR338481.1|DR338481
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042711|gb|DR338466.1|DR338466
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTANACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042710|gb|DR338465.1|DR338465
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042703|gb|DR338458.1|DR338458
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
EST: gi|86042727|gb|DR338482.1|DR338482
EST:     TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAG                         ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA
genomic: TTGTTTCTTCCTCGATCTCTCGATCTTCTGCTTTTGCTTTTCCGATTAAGgtaattaaaa ... ttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAA