1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTATACTTCTAAGCCCTCTCGTCATAAGCCTTGTTGACTCTTCTTCTTAATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTGgtaaatttgatttctgctacttctactcgtcattttattctgaattcgtctttgcgttcgaattatttcaagcaattagcttcatcttcgtgtgaaattt...
species | Arabidopsis thaliana |
transcript | AT1G48110.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTG GTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTTAAAGCEST: gi|116434950|gb|EG477542.1|EG477542
genomic: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTGgtaaatttga ... ttaatttcagGTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTTAAAGC
EST: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTG GTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTTAAAGCEST: gi|164219418|gb|ES043252.1|ES043252
genomic: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTGgtaaatttga ... ttaatttcagGTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTTAAAGC
EST: ATTTGAGGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTG GTGTTTATTCAAACTCCATTGTTACAAAEST: gi|116403222|gb|EG445814.1|EG445814
genomic: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTGgtaaatttga ... ttaatttcagGTGTTTATTCAAACTCCATTGTTACAAA
EST: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTG GTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTTAAAGCEST: gi|116437119|gb|EG479711.1|EG479711
genomic: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTGgtaaatttga ... ttaatttcagGTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTTAAAGC
EST: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTG GTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTTAAAGC
genomic: ATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTGgtaaatttga ... ttaatttcagGTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTTAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTATACTTCTAAGCCCTCTCGTCATAAGCCTTGTTGACTCTTCTTCTTAATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTGgtaaatttgatttctgctacttctactcgtcattttattctgaattcgtctttgcgttcgaattatttcaagcaattagcttcatcttcgtgtgaaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcatc