Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAAGTCGTGGTTTACGTACTAGCTTTGAGTATTCTCTTGTTCTTTGGATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtatttttttcttcgcaagcaattttatataggttctttacgatttaggcttggttgttgttcaaatttatggcgtgtaaagttttatttttatct...

Basic information

species Arabidopsis thaliana
transcript AT1G36622.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475704|gb|EG518296.1|EG518296
EST:     ATTACCAAATAGAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472439|gb|EG515031.1|EG515031
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTTTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472437|gb|EG515029.1|EG515029
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472447|gb|EG515039.1|EG515039
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472446|gb|EG515038.1|EG515038
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTTTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472430|gb|EG515022.1|EG515022
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTTTTCAAGGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472442|gb|EG515034.1|EG515034
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116475711|gb|EG518303.1|EG518303
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAT                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116475718|gb|EG518310.1|EG518310
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116475720|gb|EG518312.1|EG518312
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116475700|gb|EG518292.1|EG518292
EST:     GGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: GGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116475697|gb|EG518289.1|EG518289
EST:     ACTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116475709|gb|EG518301.1|EG518301
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472429|gb|EG515021.1|EG515021
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472440|gb|EG515032.1|EG515032
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116475713|gb|EG518305.1|EG518305
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAGCGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
EST: gi|116472445|gb|EG515037.1|EG515037
EST:     ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAA                         GGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA
genomic: ATTACCAAATACAACACTGGCCCGAGTACAATATGGATCTCCAGTTTCAAgtgagtattt ... tttcttcaagGGAAGGAAATAGGAAAAGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCA