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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTTACGAAACAACCTCCATTTCCATGGCAGACCTTCACCAATATCTCCACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttcttcttcttcagcatatttacatgttctttgcttttaaagcttcttctaattcgaatctgttataatttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G36390.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86049257|gb|DR345012.1|DR345012
EST:     CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA                         ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: gi|86049255|gb|DR345010.1|DR345010
EST:     CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA                         ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: gi|86049254|gb|DR345009.1|DR345009
EST:     CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA                         ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTRAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: gi|86049252|gb|DR345007.1|DR345007
EST:     CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA                         ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: gi|86049256|gb|DR345011.1|DR345011
EST:     CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA                         ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: gi|86049253|gb|DR345008.1|DR345008
EST:     CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA                         ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAAC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAA-C
EST: gi|86049249|gb|DR345004.1|DR345004
EST:     ACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCATCACCAA                         ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAC
genomic: ACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGC-TCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAC