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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTGCACTTGCAAGTGGGCTTGCAAAGAAAGATGATAGAAAAGGAGCTGTTGTGTACAACAGATACTACCATGTCTTTAGCGAAGGCGAACTTGAAAGgtacgtgagttttatcgagagatttgctctccgtgtattctttagtcgtgtttgctaatactgtaatctttaacag

Basic information

species Arabidopsis thaliana
transcript AT1G36310.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G36310.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA06G11230.1 (Glycine max), 5'ss of exon 2
CGTCTGCACTTGCAAGTGGGCTTGCAAAGAAAGATGATAGAAAAGGAGCTGTTGTGTACAACAGATACTACCATGTCTTTAGCGAAGGCGAACTTGAAAGgtacgtgagttttatcgagagatttgctctccgtgtattctttagtcgtg-tttgctaatactgtaatctttaacag-----------------------
|    || |||||   ||| || |||| ||||||||| | |||||| ||||| ||||| ||  |||| || ||||| ||||| |||||||| |||||||||||        |     |||  |||    |   | | | |    || ||  ||||||||        || | |                           
CCGAAGCTCTTGCTGCTGGTCTGGCAACGAAAGATGACAAAAAAGGTGCTGTGGTGTATAATCGATATTATCATGTTTTTAGTGAAGGCGAGCTTGAAAGgtaacattccatggcttagatctttttcttttatttgtccccatgtagtaatttgctaaattcactctcatcaggcttcgtgtttgacaagcttgatctt

upper sequence: AT1G36310.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA04G12110.1 (Glycine max), 5'ss of exon 2
CGTCTGCACTTGCAAGTGGGCTTGCAAAGAAAGATGATAGAAAAGGAGCTGTTGTGTACAACAGATACTACCATGTCTTTAGCGAAGGCGAACTTGAAAGgta-----------cgtgagttttatcgagagatttgctctccgtgtattctttagtcgtgtttgctaatactg--taatctttaacag------------
|    || |||||   ||| || |||| ||||||||| | |||||| ||||| ||||| ||  |||| || ||||| ||||| |||||||| |||||||||||           | |   | |  |      ||||| || || |||| |  || |      || || ||   |  | |  |||  ||             
CTGAAGCTCTTGCTGCTGGTCTGGCAACGAAAGATGACAAAAAAGGTGCTGTGGTGTATAATCGATATTATCATGTTTTTAGTGAAGGCGAGCTTGAAAGgtaacattccatggcttagatctctttctttaatttg-tccccatgtagtaatttgctaaagttactcatcaggattcacgtttggcaagcttgatcttga

upper sequence: AT1G36310.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv18s0001g04610.t01 (Vitis vinifera), 5'ss of exon 2
CGTCTGCACTTGCAAGTGGGCTTGCAAAGAAAGATGATAGAAAAGGAGCTGTTGTGTACAACAGATACTACCATGTCTTTAGCGAAGGCGAACTTGAAAGgtacgtga--gttttatcgagagatttgctctccg---tgtattctttagtcgtgttt--gctaatactgtaatctttaacag-----------------
| | ||| ||||||| ||| || |||||||||||||||| ||| || || || || ||||| ||||| ||||| || || || ||||||||||||||||||||    |  |||||      |  |||  ||||     |  | |  ||  || | |||  | |  |  | ||    ||                      
CTTGTGCTCTTGCAAATGGCCTGGCAAAGAAAGATGATAAAAAGGGTGCCGTAGTTTACAATAGATATTACCACGTGTTCAGTGAAGGCGAACTTGAAAGgtaatatattgttttccttttaatttttttctctaagatacaattcttgttcctctttcagttgtttttctatcaatttgtgcttgtgaaccattcaaac