1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATTTCACGTCGGAGATCATTTTCTCCTCCTCCGCCTCCGCCTCCACCGCCACCGCCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctctcactgtttcttcttctcctttctttcgatttcgtttggtagatttttagatctgatttttttctggtctctgtagctttacttgaagttg...
species | Arabidopsis thaliana |
transcript | AT1G35580.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCGACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTAGTAAGGAEST: gi|124973416|gb|EL047049.1|EL047049
genomic: CCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCT-GTA-GGA
EST: CCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAAGAAGCTGTAGGAEST: gi|116454993|gb|EG497585.1|EG497585
genomic: CCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAA-GA-GCTGTAGGA
EST: ACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATCEST: gi|125254483|gb|EL268568.1|EL268568
genomic: ACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATC
EST: CCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGACTGTAGGATEST: gi|124796300|gb|EH885979.1|EH885979
genomic: CCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAG-CTGTAGGAT
EST: CCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGEST: gi|125280184|gb|EL294269.1|EL294269
genomic: CCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAG
EST: CCGACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATCEST: gi|164117778|gb|ES121489.1|ES121489
genomic: CCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATC
EST: CTCAACACCAGAG ATCTTGGTTTAGTG-TATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATCEST: gi|116454994|gb|EG497586.1|EG497586
genomic: CTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATC
EST: CTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATCEST: gi|124773732|gb|EH863861.1|EH863861
genomic: CTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATC
EST: CCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATCEST: gi|124964026|gb|EL038321.1|EL038321
genomic: CCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATC
EST: CGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATCEST: gi|125287785|gb|EL301870.1|EL301870
genomic: CGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATC
EST: CCGCCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTEST: gi|124921392|gb|EH995014.1|EH995014
genomic: CCGCCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTT
EST: CCGCCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGAEST: gi|116437905|gb|EG480497.1|EG480497
genomic: CCGCCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGA
EST: ACGACTTTTCTCACTTACTCAACACCAGAG ATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATC
genomic: ACGACTTTTCTCACTTACTCAACACCAGAGgtctctctct ... ttgattttagATCTTGGTTTAGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTCACGTCGGAGATCATTTTCTCCTCCTCCGCCTCCGCCTCCACCGCCACCGCCACCGCCGCCGCCGACGACTTTTCTCACTTACTCAACACCAGAGgtctctctctcactgtttcttcttctcctttctttcgatttcgtttggtagatttttagatctgatttttttctggtctctgtagctttacttgaagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctttc